CF510096

Overview
NameCF510096
Unique NameCF510096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig944 contig Csv1_Contig944:1..404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA2_SOYBN (Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.692e-16
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    3 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            +E A  ++ +WKDPAIQETY R  EL  +PD  +YF+     +S   Y P+  D+LYA   T   G+  I+FS     P+ E    + EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  135 KELAQEIENLWKDPAIQETYARGSELQ-IPDCTDYFMENLQRLSDANYVPTKEDVLYARVRT--TGVVEIQFS-----PVGENKKSD-EV-------YRLFDVGGQ-RNERRKWIHLFEGVSAVIFCAAISEYD 251          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_PEA (Guanine nucleotide-binding protein alpha-1 subunit OS=Pisum sativum GN=GPA1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.661e-15
Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 3
Query:    3 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            +E A  ++ +WKD AIQETY R +EL  +PD   YF+     +S   Y P+  D+L A   T   G+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FCVA+S+YD
Sbjct:  134 KELAQEIESIWKDAAIQETYARGNELQ-VPDCTHYFMENLQRLSDANYVPTKEDVLLARVRT--TGVVEIQFS-----PVGENKKSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVSAVIFCVAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_LOTJA (Guanine nucleotide-binding protein alpha-1 subunit OS=Lotus japonicus GN=GPA1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 3
Query:    3 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            +E A  ++ +WKD AIQETY R +EL  +PD   YF+     +S   Y P+  D+LYA   T   G+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  134 KELALEIENLWKDAAIQETYARGNELQ-VPDCTHYFMENLHRLSDANYVPTKDDVLYARVRT--TGVVEIQFS-----PVGENKKSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVSAVIFCAAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_SOYBN (Guanine nucleotide-binding protein alpha-1 subunit OS=Glycine max GN=GPA1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 3
Query:    3 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            +E A  ++ +W+D AIQETY R +EL  +PD A YF+     +S   Y P+  D LYA   T   G+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  134 KELAQEIETMWEDAAIQETYARGNELQ-VPDCAHYFMENLERLSDANYVPTKEDFLYARVRT--TGVVEIQFS-----PVGENKRSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVTAVIFCSAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_ORYSJ (Guanine nucleotide-binding protein alpha-1 subunit OS=Oryza sativa subsp. japonica GN=GPA1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   21 VDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            V  +W+DPAIQETY R   L  LPD A+YF+     ++   Y P+  D+LYA   T  NG+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  140 VKRLWQDPAIQETYLRGSILQ-LPDCAQYFMENLDRLAEAGYVPTKEDVLYARVRT--NGVVQIQFS-----PVGENKRGG-EV-------YRLYDVGGQ-RNERRKWIHLFEGVNAVIFCAAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_ORYSI (Guanine nucleotide-binding protein alpha-1 subunit OS=Oryza sativa subsp. indica GN=GPA1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   21 VDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            V  +W+DPAIQETY R   L  LPD A+YF+     ++   Y P+  D+LYA   T  NG+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  140 VKRLWQDPAIQETYLRGSILQ-LPDCAQYFMENLDRLAEAGYVPTKEDVLYARVRT--NGVVQIQFS-----PVGENKRGG-EV-------YRLYDVGGQ-RNERRKWIHLFEGVNAVIFCAAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA2_PEA (Guanine nucleotide-binding protein alpha-2 subunit OS=Pisum sativum GN=GPA2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 3
Query:    3 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            ++ A  ++ +W+D AIQETY R +EL  +PD  +YF+     +S   Y P+  D+LYA   T   G+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  134 KDLAKEIETLWEDAAIQETYARGNELQ-VPDCTKYFMENLQRLSDANYVPTKGDVLYARVRT--TGVVEIQFS-----PVGENKRSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVTAVIFCAAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_LUPLU (Guanine nucleotide-binding protein alpha-1 subunit OS=Lupinus luteus GN=GPA1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 3
Query:    6 EYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            E A  ++ +W+D AIQETY R +EL  +P  A YF+     +S   Y P+  D+LYA   T   G+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  135 ELAKEIETLWEDAAIQETYARGNELQ-VPGCAHYFMENLQRLSDANYVPTKEDVLYARVRT--TGVVEIQFS-----PVGENKRSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVSAVIFCAAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_SOLTU (Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum tuberosum GN=GPA1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.633e-13
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   21 VDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            ++ +WKDPAIQET  R +EL  +PD A YF+      S   Y P+  D+L+A   T   G+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  140 IEALWKDPAIQETLLRGNELQ-VPDCAHYFMENLERFSDIHYIPTKEDVLFARIRT--TGVVEIQFS-----PVGENKKSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVTAVIFCAAISEYD 250          
BLAST of CF510096 vs. ExPASy Swiss-Prot
Match: GPA1_SOLLC (Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum lycopersicum GN=GPA1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.633e-13
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   21 VDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYD 404
            ++ +WKDPAIQET  R +EL  +PD A YF+      S   Y P+  D+L+A   T   G+  I+FS     P+ E      EV       Y+L  V  +  NE  KW+ +FE V  V+FC A+S+YD
Sbjct:  140 IEALWKDPAIQETLLRGNELQ-VPDCAHYFMENLERFSDVHYIPTKEDVLFARIRT--TGVVEIQFS-----PVGENKKSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVTAVIFCAAISEYD 250          
The following BLAST results are available for this feature:
BLAST of CF510096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GPA2_SOYBN2.692e-1638.81Guanine nucleotide-binding protein alpha-2 subunit... [more]
GPA1_PEA8.661e-1538.06Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_LOTJA1.930e-1438.06Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_SOYBN2.520e-1438.06Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_ORYSJ2.520e-1439.84Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_ORYSI2.520e-1439.84Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA2_PEA5.614e-1436.57Guanine nucleotide-binding protein alpha-2 subunit... [more]
GPA1_LUPLU7.332e-1437.59Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_SOLTU1.633e-1338.28Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_SOLLC1.633e-1338.28Guanine nucleotide-binding protein alpha-1 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-611 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510096 ID=CF510096; Name=CF510096; organism=Citrus sinensis; type=EST; length=404bp
CACGTGAGTATGCTCCTTTAGTTGATGAGGTGTGGAAGGATCCTGCTATA
CAGGAAACTTATAAGCGAAAAGATGAGCTCCACTTCCTCCCTGATGTTGC
AGAGTACTTCTTAAGCCGGGCTGTTGAAGTGTCGAGCAATGAATATGAAC
CTTCCGATAGAGACATTCTTTATGCAGAAGGGGTTACTCAAGGAAATGGC
TTGGCCTTCATAGAATTTTCCCTTGATGATCGTAGCCCAATGTCTGAAAC
CTACACAGACAATCTGGAAGTTCAACCTCAGCCTCTGACAAAATACCAAC
TTATAAGGGTCAATGCTAAGGGGATGAATGAGGGTTGCAAGTGGGTGGAA
ATGTTCGAAGATGTTCGGGTGGTAGTCTTCTGTGTTGCCCTTAGTGATTA
TGAT
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