CF510098

Overview
NameCF510098
Unique NameCF510098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig945 contig Csv1_Contig945:1..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510098 vs. ExPASy Swiss-Prot
Match: UFC1_DICDI (Probable Ufm1-conjugating enzyme 1 OS=Dictyostelium discoideum GN=ufc1 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.280e-61
Identity = 103/145 (71.03%), Postives = 121/145 (83.45%), Query Frame = 1 
Query:   34 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWL 468
            D +TK T+ QIPLL+ KAGPRDG  W  RLKEEY+ALI Y ++NK  DNDWF I + NP GTRW GKCWY++N  KYEFDL+FD+PVTYP TAPE+ +P+LDGKT+KMYRGGKICLT+HFKPLW++N P FGIAHAL LGLAPWL
Sbjct:    2 DNHTKQTVQQIPLLTVKAGPRDGDKWIDRLKEEYQALIKYVEINKKADNDWFNIES-NPLGTRWQGKCWYIYNFKKYEFDLEFDMPVTYPETAPEIAIPELDGKTEKMYRGGKICLTIHFKPLWSRNVPHFGIAHALALGLAPWL 145
[Close]
BLAST of CF510098 vs. ExPASy Swiss-Prot
Match: UFC1_HUMAN (Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 1.325e-58
Identity = 96/145 (66.21%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   34 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWL 468
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK+ DNDWFR+ + N EGTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWL
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWL 146
[Close]
BLAST of CF510098 vs. ExPASy Swiss-Prot
Match: UFC1_BOVIN (Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.325e-58
Identity = 96/145 (66.21%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   34 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWL 468
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK+ DNDWFR+ + N EGTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWL
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWL 146
[Close]
BLAST of CF510098 vs. ExPASy Swiss-Prot
Match: UFC1_MOUSE (Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.035e-58
Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   34 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWL 468
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK++DNDWFR+ + N EGTRW GKCWY+H+ LKYEFD++F+IP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWL
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNSDNDWFRLES-NKEGTRWFGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWL 146
[Close]
BLAST of CF510098 vs. ExPASy Swiss-Prot
Match: UFC1_RAT (Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.122e-57
Identity = 94/145 (64.83%), Postives = 118/145 (81.38%), Query Frame = 1 
Query:   34 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWL 468
            D  T+  +++IP+L T AGPRD   W QRLKEEY++LI Y + NK+ DNDWFR+ + N EGTRW GKCWY+H+ LKYEFD++F+IP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWL
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWL 146
[Close]
BLAST of CF510098 vs. ExPASy Swiss-Prot
Match: UFC1_CAEEL (Probable Ufm1-conjugating enzyme OS=Caenorhabditis elegans GN=C40H1.6 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.270e-57
Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 1 
Query:   34 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWL 468
            D  TKS+L  IPL  TKA PRDG  W +RLKEEY+A+IA  Q NK  D DWF++ + N  GT+W GKCWY HN++KYEFD++FDIP+TYP TAPE+ LP+LDGKT KMYRGGKICL+ HFKPLWA+N P+FGIAHA  LGL PW+
Sbjct:    2 DDATKSSLKAIPLCKTKASPRDGDLWIERLKEEYEAIIAAVQNNKDCDRDWFQLES-NERGTKWFGKCWYFHNMVKYEFDVEFDIPITYPVTAPEIALPELDGKTAKMYRGGKICLSEHFKPLWARNTPKFGIAHAFALGLGPWM 145
The following BLAST results are available for this feature:
BLAST of CF510098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UFC1_DICDI1.280e-6171.03Probable Ufm1-conjugating enzyme 1 OS=Dictyosteliu... [more]
UFC1_HUMAN1.325e-5866.21Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 ... [more]
UFC1_BOVIN1.325e-5866.21Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE... [more]
UFC1_MOUSE5.035e-5864.83Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 ... [more]
UFC1_RAT1.122e-5764.83Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=... [more]
UFC1_CAEEL7.270e-5766.21Probable Ufm1-conjugating enzyme OS=Caenorhabditis... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-613 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510098 ID=CF510098; Name=CF510098; organism=Citrus sinensis; type=EST; length=470bp
CTAGGGTTAGGGTTAGCAAAGATGGAGGGATGGGACCCGAACACGAAATC
GACGCTGACCCAGATCCCGCTTTTGTCAACGAAAGCCGGTCCCAGAGACG
GTGCGGCGTGGACGCAGCGGCTTAAAGAGGAGTACAAGGCTTTGATCGCC
TATACACAGATGAATAAGTCCAACGACAACGATTGGTTCCGCATCTCAGC
GGCCAATCCGGAGGGGACACGTTGGACGGGCAAGTGCTGGTACGTTCACA
ACCTCTTAAAGTACGAATTCGATCTCCAGTTTGATATTCCGGTTACGTAC
CCCGCCACGGCCCCCGAGCTTGAGCTCCCCCAACTCGATGGCAAGACCCA
GAAGATGTACAGAGGAGGGAAGATTTGCTTGACCGTACATTTCAAGCCAC
TTTGGGCTAAAAACTGTCCTAGGTTTGGTATAGCACATGCACTTTGTCTT
GGTCTTGCTCCATGGCTTGC
back to top