CF510102

Overview
NameCF510102
Unique NameCF510102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF510102_ssr78 microsatellite CF510102_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig947 contig Csv1_Contig947:1..431. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: KAP1_ARATH (Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 59/88 (67.05%), Postives = 76/88 (86.36%), Query Frame = 2
Query:  167 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            ++TVGNSTNI W E  + +++RQ+LL+QKGCV+W+TGLSGSGKSTLA ++N+ LY +GKL YILDGDN+RHGLN++L F AEDR ENI
Sbjct:   72 LSTVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENI 159          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: KAPS_CATRO (Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.905e-28
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 2
Query:  158 IFVMATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            I    TVGNSTNI W +  + + ERQ+ L Q+GCV+WITGLSGSGKSTLA ++++ L+++GKL+YILDGDN+RHGLN +L F AEDR ENI
Sbjct:  103 ILQTTTVGNSTNILWHKCAVEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTYILDGDNVRHGLNSDLSFKAEDRAENI 193          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: KAP2_ARATH (Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=AKN2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.006e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 2
Query:  191 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            NI W ES I R +RQ+LL QKGCVVWITGLSGSGKST+A +++K L+ RGKL+Y LDGDN+RHGLN++L F AE RTENI
Sbjct:   94 NIVWHESSICRCDRQQLLQQKGCVVWITGLSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEHRTENI 173          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: CYSC_CLOAB (Adenylyl-sulfate kinase OS=Clostridium acetobutylicum GN=cysC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.189e-26
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 2
Query:  185 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            STN+ WQE+ I R  R+K+L QKG V+W TGLSGSGKST+A ++ K+LY  G L+Y+LDGDNLR+GLN +LGF +EDRTENI
Sbjct:    6 STNVVWQETKIKRQNREKMLKQKGAVLWFTGLSGSGKSTVASALEKKLYEMGYLTYLLDGDNLRYGLNSDLGFKSEDRTENI 87          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: CYSC_CLOK5 (Adenylyl-sulfate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cysC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.413e-23
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  185 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            STNI W  + + R  R+KLL Q G ++W TGLSGSGKST+A  +   LY+ G+L+Y+LDGDN+RHGLN NLGF+ EDR ENI
Sbjct:    5 STNISWHRALVDREMREKLLGQNGILIWFTGLSGSGKSTIASELEMRLYNMGRLTYLLDGDNVRHGLNSNLGFTKEDRIENI 86          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: CYSC_OCEIH (Adenylyl-sulfate kinase OS=Oceanobacillus iheyensis GN=cysC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  176 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            +  STNI WQ++ + + +RQ L N K  V+W TGLSGSGKSTL+ ++ KEL+S    +Y LDGDN+RHGLNKNLGFS EDR ENI
Sbjct:    1 MNKSTNIVWQKTSVKKADRQHLNNHKSAVLWFTGLSGSGKSTLSSALEKELFSLETHTYHLDGDNVRHGLNKNLGFSPEDREENI 85          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: CYSC1_BACHD (Probable adenylyl-sulfate kinase OS=Bacillus halodurans GN=BH1489 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  182 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            N  +I W E+ + + ERQK    K CVVW TGLSGSGKSTLA +++++L+  G  SY+LDGDN+RHGLN  LGFS EDR ENI
Sbjct:    5 NQPHIVWHEASVSKEERQKRNRLKSCVVWFTGLSGSGKSTLANALDRKLFEEGIHSYVLDGDNIRHGLNAGLGFSEEDRKENI 87          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: CYSC_STAES (Adenylyl-sulfate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.665e-22
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  176 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            +  S +I W +S + + +RQ     K  V+W TGLSGSGKST++ ++ KEL++ GK +Y LDGDN+RHGLNKNLGFS EDR+ENI
Sbjct:    1 MSESNHITWHDSEVTKKQRQHKNGHKSAVIWFTGLSGSGKSTVSVALEKELFNEGKQTYRLDGDNVRHGLNKNLGFSPEDRSENI 85          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: CYSC_STAEQ (Adenylyl-sulfate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.665e-22
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  176 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            +  S +I W +S + + +RQ     K  V+W TGLSGSGKST++ ++ KEL++ GK +Y LDGDN+RHGLNKNLGFS EDR+ENI
Sbjct:    1 MSESNHITWHDSEVTKKQRQHKNGHKSAVIWFTGLSGSGKSTVSVALEKELFNEGKQTYRLDGDNVRHGLNKNLGFSPEDRSENI 85          
BLAST of CF510102 vs. ExPASy Swiss-Prot
Match: CYSC_LACPL (Adenylyl-sulfate kinase OS=Lactobacillus plantarum GN=cysC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.481e-22
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  185 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 430
            S NI W +S + + ERQ L + K  V+W TGLSGSGKST+A +V K L+ +   SY+LDGDN+R GLNKNLGFSAEDR ENI
Sbjct:    4 SDNITWHQSQVSKAERQALNHHKSVVLWFTGLSGSGKSTIANAVEKALFDQQVGSYVLDGDNMRFGLNKNLGFSAEDREENI 85          
The following BLAST results are available for this feature:
BLAST of CF510102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
KAP1_ARATH5.357e-3167.05Adenylyl-sulfate kinase 1, chloroplastic OS=Arabid... [more]
KAPS_CATRO1.905e-2862.64Adenylyl-sulfate kinase, chloroplastic OS=Catharan... [more]
KAP2_ARATH8.006e-2770.00Adenylyl-sulfate kinase 2, chloroplastic OS=Arabid... [more]
CYSC_CLOAB5.189e-2664.63Adenylyl-sulfate kinase OS=Clostridium acetobutyli... [more]
CYSC_CLOK51.413e-2359.76Adenylyl-sulfate kinase OS=Clostridium kluyveri (s... [more]
CYSC_OCEIH2.410e-2360.00Adenylyl-sulfate kinase OS=Oceanobacillus iheyensi... [more]
CYSC1_BACHD1.196e-2259.04Probable adenylyl-sulfate kinase OS=Bacillus halod... [more]
CYSC_STAES2.665e-2255.29Adenylyl-sulfate kinase OS=Staphylococcus epidermi... [more]
CYSC_STAEQ2.665e-2255.29Adenylyl-sulfate kinase OS=Staphylococcus epidermi... [more]
CYSC_LACPL3.481e-2260.98Adenylyl-sulfate kinase OS=Lactobacillus plantarum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-617 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510102 ID=CF510102; Name=CF510102; organism=Citrus sinensis; type=EST; length=431bp
CCTTAATGACCAACCCATCGGTTTTATAATCTCTAAATGACAACTTCACT
CCCTCTAGTTTCGGTTTCCATTAACGTAATAAATAAATAGGTCCTCTCTC
TGGCAGTTGCAAACAACCCAGGAAGCTCTAAGAAAAAGGGGGAAGTGAAG
ATATAACATTTTTGTGATGGCTACTGTTGGAAATTCGACTAATATATTTT
GGCAAGAATCTCCAATTGGGAGGCTTGAAAGGCAGAAGCTTCTCAACCAA
AAGGGATGTGTTGTATGGATCACGGGTCTTAGTGGATCGGGGAAAAGTAC
GCTAGCATTTTCGGTTAACAAGGAACTTTATTCTAGGGGAAAGCTGTCTT
ATATCCTTGACGGAGATAACCTTCGACATGGACTAAACAAAAATCTTGGT
TTCAGTGCAGAAGATCGAACTGAGAATATAC
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