CF510113

Overview
NameCF510113
Unique NameCF510113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TIM17_ARATH (Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.252e-38
Identity = 73/96 (76.04%), Postives = 76/96 (79.17%), Query Frame = 2
Query:   68 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            MGTPETSREPCPDRILDD               HF+KGTYNSP G+R  GGTQ+V MNAPR GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG
Sbjct:    1 MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17B_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 50/94 (53.19%), Postives = 59/94 (62.77%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +G
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17B_BOVIN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 50/94 (53.19%), Postives = 59/94 (62.77%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +G
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17A_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.058e-20
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DC+MV +R KEDPWNSI +G
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17B_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E +REPCP RI+DD                 +KG  N+P G R    G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +G
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17A_RAT (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.217e-20
Identity = 49/94 (52.13%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DC MV +R KEDPWNSI +G
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17A_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.898e-20
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E +REPCP RI+DD                 +KG  NSP G   RL G   A++  AP++GGSFAVWGGLFS  DC+MV +R KEDPWNSI +G
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TIM17_YEAST (Mitochondrial import inner membrane translocase subunit TIM17 OS=Saccharomyces cerevisiae GN=TIM17 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.162e-19
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   86 SREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            SR+PCP  IL+D               H +KG  NSP G R SG   A++  AP +GG+F VWGGLFSTFDC +  +R++EDPWN+IIAG
Sbjct:    6 SRDPCPIVILNDFGGAFAMGAIGGVVWHGIKGFRNSPLGERGSGAMSAIKARAPVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIAG 95          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17A_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.982e-19
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E  REPCP RI++D                 +KG  N+PSG   RLSGG  AVR  +  VGG+FAVWG  FS  DC++VY R+KEDPWN+II+G
Sbjct:    3 EYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISG 96          
BLAST of CF510113 vs. ExPASy Swiss-Prot
Match: TI17D_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.533e-19
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   80 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAG 355
            E +R+PCP RI++D                +LKG  N+PSG R  L GG ++VR+  P + GSFA+WG  FST DC MV  RQ+ED WN+I++G
Sbjct:    2 EYNRQPCPIRIVEDCGCAFMMGTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAIAGSFAIWGATFSTVDCVMVSYRQREDSWNAIVSG 95          
The following BLAST results are available for this feature:
BLAST of CF510113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM17_ARATH3.252e-3876.04Mitochondrial import inner membrane translocase su... [more]
TI17B_HUMAN1.051e-2053.19Mitochondrial import inner membrane translocase su... [more]
TI17B_BOVIN1.051e-2053.19Mitochondrial import inner membrane translocase su... [more]
TI17A_MOUSE3.058e-2052.13Mitochondrial import inner membrane translocase su... [more]
TI17B_MOUSE3.994e-2052.13Mitochondrial import inner membrane translocase su... [more]
TI17A_RAT5.217e-2052.13Mitochondrial import inner membrane translocase su... [more]
TI17A_HUMAN8.898e-2051.06Mitochondrial import inner membrane translocase su... [more]
TIM17_YEAST1.162e-1950.00Mitochondrial import inner membrane translocase su... [more]
TI17A_DROME1.982e-1950.00Probable mitochondrial import inner membrane trans... [more]
TI17D_DROME7.533e-1945.74Probable mitochondrial import inner membrane trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-628 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510113 ID=CF510113; Name=CF510113; organism=Citrus sinensis; type=EST; length=357bp
TTTGGGTATTGCTTGCGGGGAGATAGGTGCGTTGGAGTGCTAGATTTATC
TCCTTTTTACGACATCTATGGGAACCCCTGAAACTTCTCGAGAGCCTTGC
CCTGACCGTATTCTTGATGATGTTGGTGGTGCATTCGGAATGGGTGCGGT
TGGAGGTGCCGCATTCCACTTCTTGAAAGGCACATATAATTCCCCGTCAG
GTGCACGTTTAAGTGGAGGAACTCAAGCAGTACGTATGAATGCCCCTCGA
GTTGGCGGCAGTTTTGCTGTGTGGGGCGGCCTCTTCTCTACTTTTGATTG
CACAATGGTGTATCTCCGACAAAAGGAAGACCCATGGAACTCAATTATAG
CTGGGTG
back to top