CF510127

Overview
NameCF510127
Unique NameCF510127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2636 contig Csv1_Contig2636:359..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.701e-37
Identity = 74/79 (93.67%), Postives = 79/79 (100.00%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            ALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF+VRV+SQKH++FSLTSPFGGGRPGRVKRRN
Sbjct:  100 ALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.047e-36
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            ALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+QLVNIPSF+VR+DSQKHI+F+LTSPFGGGRPGRVKRRN
Sbjct:  100 ALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.669e-32
Identity = 64/78 (82.05%), Postives = 75/78 (96.15%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 235
            AL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+PSFVVR+DSQKHI+F+LTSPFGGGRPGRV+R+
Sbjct:   96 ALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRK 173          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.767e-32
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 241
            L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSFVVR+DSQKHI+FSL SPFGGGRPGRVKR+N+
Sbjct:  101 LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNL 179          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 3.855e-31
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:  100 LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.855e-31
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:  100 LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.855e-31
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:  100 LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.855e-31
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:  100 LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.855e-31
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:  100 LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.263e-30
Identity = 60/80 (75.00%), Postives = 74/80 (92.50%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 241
            AL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   98 ALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177          
The following BLAST results are available for this feature:
BLAST of CF510127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS92_ARATH4.701e-3793.6740S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH3.047e-3691.1440S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN2.669e-3282.0540S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME7.767e-3282.2840S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT3.855e-3180.7740S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN3.855e-3180.7740S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE3.855e-3180.7740S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN3.855e-3180.7740S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN3.855e-3180.7740S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]
RS9B_SCHPO3.263e-3075.0040S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-642 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510127 ID=CF510127; Name=CF510127; organism=Citrus sinensis; type=EST; length=407bp
GGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTGTGT
TCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGG
CAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGT
AGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCCCT
TTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCTGCT
GCCAAGAAGGCCGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAAT
TACCTTGTGTGAGCAGATAGTTTTTTTATGGTTACAGTAGGAACTCTGGC
TGAACTTTGCAAATCGACTTATCTTCTCTTAAGTTTTATGTTTTTGCTAA
TTTTCTT
back to top