CF510133

Overview
NameCF510133
Unique NameCF510133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length311
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig889 contig Csv1_Contig889:647..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE  FSANAAA ASR+SSPRVTNE VQK AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ
Sbjct:  342 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 442          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.103e-44
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQKAA-ALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            KLDDEIKSWLAFAAQKV+EVNALAKAL+GQKDE FFSANAAA ASRKSSPRVTNE VQKAA ALKGSDHRRAT VS+RLDAQQKKLNLPILPTTTIGSFPQ
Sbjct:  342 KLDDEIKSWLAFAAQKVLEVNALAKALSGQKDEAFFSANAAALASRKSSPRVTNEAVQKAATALKGSDHRRATTVSSRLDAQQKKLNLPILPTTTIGSFPQ 442          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.533e-43
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            KLD EIKSWLAFAAQKVVEVNALAKALAG+KDE FFS NAAAQASRKSSPRVTN+ VQK AAAL+GSDHRRAT VSARLDAQQKKLNLP+LPTTTIGSFPQ
Sbjct:  342 KLDKEIKSWLAFAAQKVVEVNALAKALAGEKDEAFFSENAAAQASRKSSPRVTNQAVQKAAAALRGSDHRRATTVSARLDAQQKKLNLPVLPTTTIGSFPQ 442          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.800e-42
Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            KLD EIKSWLAFAAQK+VEVNALAKAL G KDE FFS NAAAQASRKSSPRV NE VQK AAAL+GS+HRR TNVSARLDAQQKKLNLPILPTTTIGSFPQ
Sbjct:  341 KLDQEIKSWLAFAAQKIVEVNALAKALTGHKDEAFFSPNAAAQASRKSSPRVNNEAVQKAAAALRGSEHRRVTNVSARLDAQQKKLNLPILPTTTIGSFPQ 441          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.351e-19
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGF--FSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            +LDDE+K WLAFA QK+ E+  L +A+   +D      + +AAA ASR +S RV N+ V+K AAA++  D  RA     R  AQQ +LNLP+LPTTTIGSFPQ
Sbjct:  335 RLDDELKGWLAFARQKLDELAVLKRAVIDGRDAAHAALAGSAAAIASRAASRRVHNDSVKKRAAAIRAQDAERAAPYPVRAAAQQARLNLPLLPTTTIGSFPQ 437          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 54/103 (52.43%), Postives = 66/103 (64.08%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKD--EGFFSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            KLDDE+K WLAFA QK+ E+  + +AL       +G    N  A ASR  S RV N  V+K  AA++ +D  RA    AR DAQQ +LNLP+LPTTTIGSFPQ
Sbjct:  338 KLDDELKGWLAFARQKLDELAVIKRALVEGPAAVQGELDDNRIAIASRTQSRRVHNAGVKKRVAAIRAADAVRAAPYPARADAQQARLNLPLLPTTTIGSFPQ 440          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_BURTA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.205e-18
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            KLDDE+K+WLAFA QK  EV AL  ALA  +      F A A A A+R++S R+ N  V++  AAL  +D RRA+   AR  AQ+ + +LP LPTTTIGSFPQ
Sbjct:  338 KLDDELKAWLAFAVQKTREVAALRDALAKGRAAVAAEFDAAAVAAAARRTSARIHNPLVKRRVAALTDADARRASAYPARAAAQRARFDLPPLPTTTIGSFPQ 440          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_PSEU5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=metE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 NKLDDEIKSWLAFAAQKVVEVNALAKALAGQKD---EGFFSANAAAQASRKSSPRVTNERVQ-KAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            ++LD+E+KSWLAFA QK  EV  LA+A+   +D   +   + + A QA+R  SPR+    VQ + AA++  D RR +  + R++ Q+ +L LP  PTTTIGSFPQ
Sbjct:  344 DRLDEEVKSWLAFAVQKCSEVATLARAIDDPQDAEVQAALARSRAVQAARAQSPRIHKPAVQARLAAIEAKDSRRTSVFATRIELQRARLQLPAFPTTTIGSFPQ 448          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_BURP6 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 668) GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.400e-17
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            +LD+E+K+WLAFAAQK  EV AL  AL   +      F   AAA A+R++S R+ N  V++  AAL  +D RRA+  S R  AQ+ +  LP+LPTTTIGSFPQ
Sbjct:  338 RLDEELKTWLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAAAAAARRTSARIHNPLVKRRVAALTDADARRASTYSVRAAAQRARFGLPLLPTTTIGSFPQ 440          
BLAST of CF510133 vs. ExPASy Swiss-Prot
Match: METE_BURPS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei GN=metE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 2
Query:    5 KLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQK-AAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQ 304
            +LD+E+K+WLAFAAQK  EV AL  AL   +      F   AAA A+R++S R+ N  V++  AAL  +D RRA+  S R  AQ+ +  LP+LPTTTIGSFPQ
Sbjct:  338 RLDEELKTWLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAAAAAARRTSARIHNPLVKRRVAALTDADARRASAYSVRAAAQRARFGLPLLPTTTIGSFPQ 440          
The following BLAST results are available for this feature:
BLAST of CF510133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
METE_ARATH1.343e-4494.065-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR5.103e-4492.085-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO2.533e-4390.105-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC2.800e-4288.125-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO4.351e-1951.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ2.820e-1852.435-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURTA8.205e-1852.435-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEU51.072e-1744.765-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP61.400e-1750.495-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPS2.387e-1750.495-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-648 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510133 ID=CF510133; Name=CF510133; organism=Citrus sinensis; type=EST; length=311bp
GAACAAACTCGACGACGAAATCAAGTCATGGCTGGCATTTGCTGCCCAGA
AAGTTGTTGAAGTGAATGCATTGGCCAAGGCTTTGGCTGGCCAAAAGGAT
GAGGGATTCTTCTCTGCCAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTC
CCCGAGAGTGACCAATGAGAGAGTTCAAAAGGCTGCTGCTTTGAAAGGAT
CAGACCACAGACGTGCTACAAATGTTAGTGCTAGATTAGATGCTCAACAG
AAGAAGCTCAATCTTCCAATCCTCCCAACCACCACAATTGGATCCTTCCC
ACAAAACCATT
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