CF510141

Overview
NameCF510141
Unique NameCF510141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1665 contig Csv1_Contig1665:34..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510141 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.038e-36
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:   64 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV 303
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV 83
[Close]
BLAST of CF510141 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.038e-36
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:   64 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV 303
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV 83
[Close]
BLAST of CF510141 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.313e-36
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:   64 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV 303
            MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDLRV
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRV 81
[Close]
BLAST of CF510141 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.716e-35
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   94 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV 303
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRV 76
The following BLAST results are available for this feature:
BLAST of CF510141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ1.038e-3689.16GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.038e-3689.16GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH2.313e-3686.42GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ9.716e-3594.29GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-656 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510141 ID=CF510141; Name=CF510141; organism=Citrus sinensis; type=EST; length=303bp
CATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACTCTCAAAGTTCA
GGTGTTTTTCAGAATGGGAAGTACTGAAGGAACCTATGGTGCATACACCT
ATGAGGAGCTTGAGAGGGAACCTTACTGGCCTTCCGAGAAGCTCCGAATT
TCTGTCACTGGGGCAGGTGGTTTTATTGCCTCCCACATTGCTCGGCGTCT
GAAGAGTGAAGGCCATTACATTATTGCTTCTGACTGGAAGAAGAATGAGC
ACATGACTGAGGATATGTTCTGTCATGAATTCCACCTTGTTGACCTTAGG
GTC
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