CF510142

Overview
NameCF510142
Unique NameCF510142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: U161_ARATH (UPF0161 protein At3g09310 OS=Arabidopsis thaliana GN=At3g09310 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.260e-35
Identity = 77/141 (54.61%), Postives = 103/141 (73.05%), Query Frame = 2
Query:   20 MAVSLNCHNKPLSTSLNFQNPNFSSSKYHRK-NQNHISAFRLPAKTKTH-RIVTVRGLGTDSDPNTPQEDDKEVNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            MAV ++ H   ++ +++    N +  K HR+ N++ +    LP  TK   R ++ +   +  DP +PQ D +E+ S+GV+AAL+ML FYKREISP++PRSCRYVPTCSEYSM+AYKKYGV+KGTVLT WRLCRCNPLGGSG
Sbjct:    1 MAVVISIHRPYVTLTIS---KNRNPLKPHRQFNESCLRFDHLPRNTKNQLRCLSAKSTPSKPDPASPQ-DGEELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSMEAYKKYGVLKGTVLTTWRLCRCNPLGGSG 137          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2412_THEPX (UPF0161 protein Teth514_2412 OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_2412 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.730e-14
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  266 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            ++  Y+R ISP+ PRSCR+ PTCS+YS++A  KYG++KG +++ WR+ RCNP    G
Sbjct:    8 LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNPFNPGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2293_THEP3 (UPF0161 protein Teth39_2293 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=Teth39_2293 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.730e-14
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  266 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            ++  Y+R ISP+ PRSCR+ PTCS+YS++A  KYG++KG +++ WR+ RCNP    G
Sbjct:    8 LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNPFNPGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y4526_CAUSK (UPF0161 protein Caul_4526 OS=Caulobacter sp. (strain K31) GN=Caul_4526 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.657e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 2
Query:  269 LSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            L  YK  +SP + R CRY+PTCSEY+ QA K +G +KG+ L   R+CRCNPLGGSG
Sbjct:   12 LKAYKTTLSPFIGRQCRYLPTCSEYAAQALKDHGPLKGSWLAVGRICRCNPLGGSG 67          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y195_PERMH (UPF0161 protein PERMA_0195 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=PERMA_0195 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            R  + ++  YK+ +SP +P SCRY PTCS Y++Q+ +KYG +KG++   WR+ RCNP    G
Sbjct:    3 RFLIKLIKIYKKFVSPALPNSCRYYPTCSSYAIQSIEKYGALKGSLKAVWRILRCNPFSKGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1913_GLOVI (UPF0161 protein gsl1913 OS=Gloeobacter violaceus GN=gsl1913 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            RAA   + FY+R +SPL P +CRYVPTCSEY+ QA +++GV  G  L   RLCRC+PL   G
Sbjct:    6 RAATGAIRFYQRFVSPLTPPTCRYVPTCSEYTRQAIERFGVAAGIWLGTKRLCRCHPLHPGG 67          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y317_NEIMF (UPF0161 protein NMC0317 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=NMC0317 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  233 VNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +N L  +  L ++ FY+  ISPL+P  CRY PTCS+Y+++A KKYG  KG  L   R+ RC+PLGG G
Sbjct:    1 MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPLGGHG 68          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2420_CYTH3 (UPF0161 protein CHU_2420 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=CHU_2420 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.311e-13
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 2
Query:  269 LSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +  Y+  ISPL+P +CRY PTCSEY +QA +KYG +KG  L   R+C CNP GGSG
Sbjct:   19 VKIYQYSISPLLPGACRYTPTCSEYCVQAIEKYGPLKGIWLGTKRICSCNPWGGSG 74          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2800_THETN (UPF0161 protein TTE2800 OS=Thermoanaerobacter tengcongensis GN=TTE2800 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  266 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            ++  Y++ ISP+ PR+CR+ PTCS+YS++A  KYG++KG +++ WR+ RCNP    G
Sbjct:    8 LIRLYQKYISPMKPRTCRFYPTCSQYSIEAISKYGLLKGGLMSIWRILRCNPFNPGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3056_PARD8 (UPF0161 protein BDI_3056 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=BDI_3056 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.943e-13
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2
Query:  275 FYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            FYK  IS + P SCRY PTCSEY++QA KKYG VKG  L   R+ RC+P GGSG
Sbjct:   15 FYKYCISLMTPASCRYTPTCSEYAVQALKKYGPVKGLYLAVKRILRCHPWGGSG 68          
The following BLAST results are available for this feature:
BLAST of CF510142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
U161_ARATH1.260e-3554.61UPF0161 protein At3g09310 OS=Arabidopsis thaliana ... [more]
Y2412_THEPX2.730e-1450.88UPF0161 protein Teth514_2412 OS=Thermoanaerobacter... [more]
Y2293_THEP32.730e-1450.88UPF0161 protein Teth39_2293 OS=Thermoanaerobacter ... [more]
Y4526_CAUSK4.657e-1458.93UPF0161 protein Caul_4526 OS=Caulobacter sp. (stra... [more]
Y195_PERMH1.355e-1345.16UPF0161 protein PERMA_0195 OS=Persephonella marina... [more]
Y1913_GLOVI1.355e-1354.84UPF0161 protein gsl1913 OS=Gloeobacter violaceus G... [more]
Y317_NEIMF1.770e-1350.00UPF0161 protein NMC0317 OS=Neisseria meningitidis ... [more]
Y2420_CYTH32.311e-1357.14UPF0161 protein CHU_2420 OS=Cytophaga hutchinsonii... [more]
Y2800_THETN3.019e-1347.37UPF0161 protein TTE2800 OS=Thermoanaerobacter teng... [more]
Y3056_PARD83.943e-1362.96UPF0161 protein BDI_3056 OS=Parabacteroides distas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510142 ID=CF510142; Name=CF510142; organism=Citrus sinensis; type=EST; length=437bp
GAAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAAC
CCTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAA
TATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAA
AACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGG
ATCCGAACACTCCACAAGAAGATGATAAAGAGGTCAATAGTTTGGGAGTC
AGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCTCGCCACT
GATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTACTCAATGC
AAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGACTGCTTGG
CGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGAT
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