CF510153

Overview
NameCF510153
Unique NameCF510153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6197 contig Csv1_Contig6197:26..378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_XENLA (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.736e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYID
Sbjct:    2 PGLNCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_PONAB (Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.736e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYID
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNERVVVIRVDKEKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_RAT (Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif2s1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.185e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYID
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_MOUSE (Eukaryotic translation initiation factor 2 subunit 1 OS=Mus musculus GN=Eif2s1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.185e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYID
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_HUMAN (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.185e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYID
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_BOVIN (Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.185e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYID
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_XENTR (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.078e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYID
Sbjct:    2 PALSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_CHICK (Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus gallus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.055e-20
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  105 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYID
Sbjct:    2 PALSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYID 84          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_DICDI (Eukaryotic translation initiation factor 2 subunit 1 OS=Dictyostelium discoideum GN=eif2s1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.931e-20
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:  114 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            +CRMYE +YPE +  VM+++++I DMG YVSLLEYNNIEGMIL SE             +VG+ E V+V+RVDK+KGYID
Sbjct:    6 DCRMYEKKYPEENELVMVRIESIGDMGVYVSLLEYNNIEGMILLSEISRRRIRSINKLVRVGKTEAVVVVRVDKDKGYID 85          
BLAST of CF510153 vs. ExPASy Swiss-Prot
Match: IF2A_SCHPO (Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe GN=tif211 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  117 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYID 353
            CRMYE R+PEVD  V++ V+ I +MGAYV LLEY+NIEGM+L SE             +VGR E V+VLRVDKEKGYID
Sbjct:    6 CRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDKEKGYID 84          
The following BLAST results are available for this feature:
BLAST of CF510153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IF2A_XENLA4.736e-2157.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_PONAB4.736e-2157.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_RAT6.185e-2157.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_MOUSE6.185e-2157.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HUMAN6.185e-2157.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_BOVIN6.185e-2157.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENTR8.078e-2157.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_CHICK1.055e-2057.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DICDI8.931e-2056.25Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_SCHPO1.523e-1959.49Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-668 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510153 ID=CF510153; Name=CF510153; organism=Citrus sinensis; type=EST; length=353bp
GTTGTCTTAAAACCCTAATTCTTCTTCCCACTCCCTTCGAATTTTCCCGA
GAAAACGCAAAAGCTAAAAAGTTTTCCGAGCAACCAATCATGGCAAGCCA
CTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTACCCGGAAGTCG
ACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACATGGGCGCCTAC
GTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATCCTTTTCTCGGA
GCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCATTAAAGTCGGCC
GCATAGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGGTTACATT
GAT
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