CF510156

Overview
NameCF510156
Unique NameCF510156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:131..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF510156 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 6.650e-24
Identity = 68/125 (54.40%), Postives = 81/125 (64.80%), Query Frame = 2 
Query:   77 NSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 439
            NSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+C
Sbjct:    5 NSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSC 126
[Close]
BLAST of CF510156 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:  323 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 439
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSC 67
[Close]
BLAST of CF510156 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:  323 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 439
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+C
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSC 100
The following BLAST results are available for this feature:
BLAST of CF510156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSAN_ARATH6.650e-2454.40Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE3.096e-1384.62Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU1.537e-1284.62Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-671 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510156 ID=CF510156; Name=CF510156; organism=Citrus sinensis; type=EST; length=439bp
ATTTTGTTCTCAACTTCGTGAACTTTGTAAAACAAAAAAAAAAATTTGCG
CTGCAGCAGGAGCGATGGCAGCCATGAACTCTAGTGTACTCGCATGCAAC
TATGCCATTTCAGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATTGT
TTCGGTTTCAACCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAGAG
CTCAACAAGTTGATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGAGA
GCTGCCATGGCTCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCTGC
TGCTTCTTCTGCTAATGCTGGGGTCATCGATGAATACCTTGAGAGAAGCA
AAGCCAACAAGGAATTGAATGACCAGAAGAGATTGGCAACAAGTGGTGCA
AACTTTGCCAGAGCATACACTGTTCAATTTGGCACATGC
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