CF510157

Overview
NameCF510157
Unique NameCF510157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF510157_ssr31 microsatellite CF510157_ssr31:31..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9729 contig Csv1_Contig9729:20..349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.808e-35
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 51.6026 bits (122), Expect = 2.808e-35
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKGIVYGKPTNQGVTQLK
Sbjct:   71 RKRPVPKGIVYGKPTNQGVTQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.142e-34
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 51.6026 bits (122), Expect = 5.142e-34
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKGIVYGKPTNQGVTQLK
Sbjct:   71 RKRPVPKGIVYGKPTNQGVTQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.142e-34
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 51.6026 bits (122), Expect = 5.142e-34
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKGIVYGKPTNQGVTQLK
Sbjct:   71 RKRPVPKGIVYGKPTNQGVTQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.014e-31
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQ 57

HSP 2 Score: 48.9062 bits (115), Expect = 1.014e-31
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKGIVYGKP NQG+TQLK
Sbjct:   71 RKRPVPKGIVYGKPKNQGITQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.720e-31
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 48.9062 bits (115), Expect = 1.720e-31
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKGIVYGKP NQG+TQLK
Sbjct:   71 RKRPVPKGIVYGKPKNQGITQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.187e-26
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 40.4318 bits (93), Expect = 4.187e-26
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGATYGKPVHHGVNQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.187e-26
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 40.4318 bits (93), Expect = 4.187e-26
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGATYGKPVHHGVNQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_MOUSE (60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 4.187e-26
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 40.4318 bits (93), Expect = 4.187e-26
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGATYGKPVHHGVNQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_MACFA (60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.187e-26
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 40.4318 bits (93), Expect = 4.187e-26
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGATYGKPVHHGVNQLK 93
[Close]
BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_HUMAN (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.187e-26
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 3 
Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57

HSP 2 Score: 40.4318 bits (93), Expect = 4.187e-26
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1 
Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGATYGKPVHHGVNQLK 93
The following BLAST results are available for this feature:
BLAST of CF510157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL15_PETHY2.808e-3596.4960S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL152_ARATH5.142e-3491.2360S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH5.142e-3491.2360S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15B_PICMA1.014e-3184.2160S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA1.720e-3184.2160S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15_RAT4.187e-2677.1960S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB4.187e-2677.1960S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]
RL15_MOUSE4.187e-2677.1960S ribosomal protein L15 OS=Mus musculus GN=Rpl15... [more]
RL15_MACFA4.187e-2677.1960S ribosomal protein L15 OS=Macaca fascicularis G... [more]
RL15_HUMAN4.187e-2677.1960S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-672 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510157 ID=CF510157; Name=CF510157; organism=Citrus sinensis; type=EST; length=331bp
GAAAACCCTAGACGCACGGATACTGCGCATCTCAGCTCAGCTCAGAGCCA
ATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGTCAGA
TGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAACATC
CATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCGACGC
TTGGGTTACAAGGCCAAGCAGGGTTATGTTGCTTATCGTGTGCGGGTAAG
GCGCGGTGGTCCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGTAAA
CCCACAAACCAGGGTGTTACTCAACTGAAGT
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