CF510161

Overview
NameCF510161
Unique NameCF510161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF510161 vs. ExPASy Swiss-Prot
Match: RCC2_MOUSE (Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 3 
Query:   21 MYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQ-YGELGYGPYGQKSSAMPKKVDILEGLHVISVACGYGHSLVI 260
            MYPK + DL GW +R +  G     V AD S ISWG +  +GELGYG +  KSS   ++V  L+G+    VA GY HSLVI
Sbjct:  417 MYPKAVQDLCGWRIRSLACGKSSIIVAADESTISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVI 497
[Close]
BLAST of CF510161 vs. ExPASy Swiss-Prot
Match: RCC2_HUMAN (Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 3 
Query:   21 MYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQ-YGELGYGPYGQKSSAMPKKVDILEGLHVISVACGYGHSLVI 260
            MYPK + DL GW +R +  G     V AD S ISWG +  +GELGYG +  KSS   ++V  L+G+    VA GY HSLVI
Sbjct:  419 MYPKAVQDLCGWRIRSLACGKSSIIVAADESTISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVI 499
[Close]
BLAST of CF510161 vs. ExPASy Swiss-Prot
Match: RCC2_DANRE (Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 3 
Query:   21 MYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHA-QYGELGYGPYGQKSSAMPKKVDILEGLHVISVACGYGHSLVI 260
            MYPK + DL GW +R +  G     V AD S ISWG +  +GELGYG    KSS   ++V  L+G++   V  GY HSLVI
Sbjct:  392 MYPKAVQDLCGWKIRSLACGKSSIIVAADDSTISWGPSPTFGELGYGDNKPKSSTTAQEVKTLDGVYSEQVVMGYSHSLVI 472
[Close]
BLAST of CF510161 vs. ExPASy Swiss-Prot
Match: RCC2_XENLA (Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 3 
Query:   12 DDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHA-QYGELGYGPYGQKSSAMPKKVDILEGLHVISVACGYGHSLVI 260
            D  MYPK + DL GW +R +  G     V AD S ISWG +  +GELGYG    KSS   ++V  L+G++   V  G  H+LV+
Sbjct:  407 DSTMYPKAVQDLCGWKVRSLACGKSSIIVAADESTISWGPSPTFGELGYGDNKAKSSTTAQEVKTLDGIYSDQVIMGNSHTLVV 490
The following BLAST results are available for this feature:
BLAST of CF510161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RCC2_MOUSE5.562e-1448.15Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1[more]
RCC2_HUMAN5.562e-1448.15Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2[more]
RCC2_DANRE2.760e-1346.91Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 S... [more]
RCC2_XENLA3.986e-1242.86Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-676 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510161 ID=CF510161; Name=CF510161; organism=Citrus sinensis; type=EST; length=388bp
AAAATAATGGTGATGACTGGATGTATCCTAAGCCTCTCATGGATTTGAGT
GGATGGAATTTACGTTGCATGGATTCAGGCAATATGCATCATTTTGTCGG
AGCTGATTCCTCTTGCATAAGTTGGGGTCATGCTCAATATGGAGAGTTGG
GATATGGTCCTTATGGGCAGAAGTCTTCTGCAATGCCTAAAAAGGTAGAT
ATTCTTGAAGGCTTGCATGTTATCAGTGTTGCTTGTGGTTATGGCCATTC
CTTGGTTATAGTTGATAGAACAAATGTTGGTGACTGACTTGATCAGCTTG
ATGTTTACGATGGCAAAGCTTCCAGAGAAGACAATGAGGAAATTGATAGA
AACTCTACAGTGCCCCCAAAAAAAGGTGCTGCTAAAGT
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