CF510162

Overview
NameCF510162
Unique NameCF510162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7064 contig Csv1_Contig7064:494..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.567e-59
Identity = 113/177 (63.84%), Postives = 137/177 (77.40%), Query Frame = 1
Query:    1 GSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLG--VARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDPIIPRT 525
            G++SE AA KAYP C+ +PCD+FE  F+AVELW+AD+AVLP+ENS  GSIHRNYDLLLRHRLHIVGEVQL  + CLLALPG++ + L RV+SHPQ LA  +  LT+LG  VARE VDDTA AA+++ASN LRD          EIYGL IL D IQD+   +TRF++LAR+PIIPRT
Sbjct:  125 GAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQGLAQCEHTLTKLGLNVAREAVDDTAGAAEFIASNNLRDTAAIASARAAEIYGLEILEDGIQDDVSNVTRFVMLAREPIIPRT 301          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.770e-58
Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 1
Query:    1 GSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLG--VARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDPIIPRT 525
            G++SE AA KAYP C+ +PCD+FE  F+AVELW+AD+AVLP+ENS  GSIHRNYDLLLRHRLHIVGEVQL  + CL+ALPG++ + L RV+SHPQ LA  +  LT+LG  VARE VDDTA AA+++A+N +RD          EIYGL IL D IQD+   +TRF++LAR+PIIPRT
Sbjct:  130 GAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLIALPGVRKEFLTRVISHPQGLAQCEHTLTKLGLNVAREAVDDTAGAAEFIAANNIRDTAAIASARAAEIYGLEILEDGIQDDASNVTRFVMLAREPIIPRT 306          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.074e-55
Identity = 106/177 (59.89%), Postives = 134/177 (75.71%), Query Frame = 1
Query:    1 GSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDPIIPRT 525
            G++SE AA KAYP C+ +PCD+F+  F+AVELW+AD+AVLP+ENS  GSIHRNYDLLLRHRLHIVGEVQ+  + CLLALPG++ D + RV+SHPQALA ++  L  L    ARE   DTA+AA+Y+++N L D          E+Y L ILAD IQD+P  +TRFL+LAR+PIIPRT
Sbjct:  134 GAYSEAAAGKAYPNCDAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQIPVHHCLLALPGVRTDCVSRVISHPQALAQTEHSLDVLTPHAAREAFHDTAAAAEYISANDLHDTAAVASARAAELYNLQILADGIQDDPGNVTRFLMLAREPIIPRT 310          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.402e-55
Identity = 108/175 (61.71%), Postives = 129/175 (73.71%), Query Frame = 1
Query:    1 GSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDPIIPRT 525
            G++SE AA KAYP CE VPC+EF+  F+AVE WL D+AVLPIENS  GSIHRNYDLLLRH LHIVGEV+LA   CLLA  G+  + L+RVLSHPQALA  +  LT+LG+ RE VDDTA AA+ +A   L D          +IYGLNI+A  IQD+ D +TRFL+LAR+PIIP T
Sbjct:  108 GAYSESAAEKAYPNCEAVPCEEFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHNLHIVGEVKLAVRHCLLANHGVNIEDLRRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKQIAFENLNDAAAVASEKAAKIYGLNIVAKDIQDDCDNVTRFLMLAREPIIPGT 282          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.329e-55
Identity = 107/177 (60.45%), Postives = 133/177 (75.14%), Query Frame = 1
Query:    1 GSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDPIIPRT 525
            G++SE AA KAYP  E +PCD+F+  F+AVELW+AD+AVLP+ENS  GSIHRNYDLLLRHRLHIVGEVQ+  + CLLALPG++ D + RV+SHPQALA ++  L +L    A E   DTA+AA+Y+A+N L D          E+YGL ILAD IQD+   +TRFL+LARDPIIPRT
Sbjct:  135 GAYSEAAAGKAYPNSEAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQIPVHHCLLALPGVRTDCITRVISHPQALAQTEGSLNKLTPKAAIEAFHDTAAAAEYIAANNLHDTAAVASARAAELYGLQILADGIQDDAGNVTRFLMLARDPIIPRT 311          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.329e-55
Identity = 107/175 (61.14%), Postives = 130/175 (74.29%), Query Frame = 1
Query:    1 GSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDPIIPRT 525
            G++SE AALKA+P CETVPC++FE  F+AVELWL DKAVLPIENS  GSIHRNYDLLLRHRLHIV EV L  N CLL +PG+K + +K VLSHPQAL      L  LG+ R +  DTA+AAQ V+S+G  D           IYGL+ILA+ IQD+ + +TRFL+LAR+P+IPRT
Sbjct:  115 GAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQRISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREPMIPRT 289          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: PHEA_BUCAP (P-protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=pheA PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.210e-18
Identity = 55/176 (31.25%), Postives = 91/176 (51.70%), Query Frame = 1
Query:    1 GSFSEDAALKA----YPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVAR-ENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDPI 513
            GS+S  AA +     +  C    C  F +  ++VE    D AVLPIENS SG I+  +D+L +  L I+GE+ ++ N CLLA+  I+ +++K V SHPQ        + +    + +  + TA A + +    +            +IYGL +L   + ++   ITRF++L+R P+
Sbjct:  113 GSYSHIAASQYAEQNFKTCIENACLSFNEVIQSVENNQTDYAVLPIENSCSGFINEIFDILKKTNLFIIGEINISINHCLLAIKKIELNKIKAVYSHPQPFQQCSYFIKKFPNWKIQYTNSTADAMKKIVKYNITTNAALGSELGSKIYGLKVLYKNLANKKKNITRFILLSRKPV 288          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: PHEA_NEIG1 (P-protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=pheA PE=4 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 62/169 (36.69%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    1 GSFSEDAALKAYPKC-ETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVL 498
            G+F++ AA+K +     T+ C   +D FK VE   AD  V P+ENS+ GS+ R  DLL    L   GEV L  +  LL       + + +V SH QALA  +  L +      R  V   A AA+ VA +              EIYGL+++A+ I+DEP+  TRFLV+
Sbjct:   99 GTFTQQAAIKHFGHAAHTMACPTIDDCFKQVETRQADYLVAPVENSTEGSVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQCNDWLGRRLPNAERIAVSSNAEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTTRFLVM 267          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: PHEA_BUCAI (P-protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=pheA PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.161e-17
Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 1
Query:    1 GSFSEDAALKA----YPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALAS-SDIVLTQLGVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDP 510
            GS+S  AA K     + KC T  C  FE+   +VE   +D AVLPIEN+ SGSI+  +D+L +  L I+GE+ +  N  LL L  I+ +++K + SHPQ     SD +        +    TA A + +                 +IYGL IL   + ++ + ITRF++L R+P
Sbjct:  113 GSYSHIAAYKYADLNFQKCITNECSTFEEVVLSVENNQSDYAVLPIENTCSGSINEVFDILKKTNLFIIGEINIFINHNLLTLKKIELNKIKTIYSHPQPFQQCSDFIKKFPEWKIKYTKSTADAMKKIKKYNDVTNAALGSEIGSKIYGLEILMKNLANKENNITRFILLNRNP 287          
BLAST of CF510162 vs. ExPASy Swiss-Prot
Match: PHEA_HAEIN (P-protein OS=Haemophilus influenzae GN=pheA PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = 1
Query:   58 CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLG-VARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDIITRFLVLARDP 510
            C  FE  F+ V+   AD  VLP+EN++SG+I+  YDLL    L +VGE+      C+L       +Q+  + SHPQ +      +  L  V  E  + ++ A Q VAS    +          ++YGL++L   I ++ + ITRF+V+A++P
Sbjct:  136 CQSFEQVFEKVQTGEADFGVLPLENTTSGAINEVYDLLQHTDLSLVGELAYPIKHCVLVNDKTDLNQIDTLYSHPQVIQQCSQFIHSLDRVHIEYCESSSHAMQLVASLNKPNIAALGNEDGGKLYGLSVLKTNIANQENNITRFIVVAKEP 287          
The following BLAST results are available for this feature:
BLAST of CF510162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AROD6_ARATH3.567e-5963.84Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD3_ARATH1.770e-5862.15Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD4_ARATH1.074e-5559.89Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
AROD2_ARATH1.402e-5561.71Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
AROD5_ARATH5.329e-5560.45Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
AROD1_ARATH5.329e-5561.14Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
PHEA_BUCAP5.210e-1831.25P-protein OS=Buchnera aphidicola subsp. Schizaphis... [more]
PHEA_NEIG16.805e-1836.69P-protein OS=Neisseria gonorrhoeae (strain ATCC 70... [more]
PHEA_BUCAI1.161e-1734.29P-protein OS=Buchnera aphidicola subsp. Acyrthosip... [more]
PHEA_HAEIN3.734e-1632.89P-protein OS=Haemophilus influenzae GN=pheA PE=4 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-677 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510162 ID=CF510162; Name=CF510162; organism=Citrus sinensis; type=EST; length=527bp
GGCTCATTCAGTGAGGATGCTGCACTCAAAGCCTACCCAAAATGTGAAAC
TGTACCCTGTGATGAGTTTGAAGACACTTTTAAGGCTGTTGAATTGTGGC
TTGCTGACAAAGCGGTTCTTCCCATTGAGAATTCTTCATCTGGAAGTATT
CATCGCAACTATGACTTGCTTCTTCGTCATAGACTTCACATTGTGGGTGA
GGTGCAGTTAGCTGCTAACTTCTGCCTTCTAGCGCTGCCAGGCATTAAAG
CAGATCAGTTAAAACGTGTTTTAAGCCACCCACAGGCACTTGCCTCAAGT
GATATTGTCCTGACTCAGCTAGGCGTTGCCAGAGAAAACGTTGATGATAC
AGCTAGTGCTGCTCAGTATGTAGCCTCAAATGGCCTGAGGGATGCTGGTG
CTGTTGCAAGTGCCCGAGCTGCAGAGATATATGGGCTCAACATACTTGCA
GATAGAATCCAGGATGAACCTGATATTATAACTCGTTTTCTGGTACTTGC
AAGGGATCCTATAATCCCAAGGACTGA
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