CF510216

Overview
NameCF510216
Unique NameCF510216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length228
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8101 contig Csv1_Contig8101:14..241. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510216 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   67 ATTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAHGAWITRNYKGLQDKIK 228
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+A  AWI RNYKGLQDKIK
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIK 62
[Close]
BLAST of CF510216 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   67 ATTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAHGAWITRNYKGLQDKIK 228
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+A  AWI RNYKGLQDKIK
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIK 62
[Close]
BLAST of CF510216 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   67 ATTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAHGAWITRNYKGLQDKIK 228
            +++ +E+LPP L S ++ PP+FDGT RLYI Y CPFA  AW+TRN KGLQDK++
Sbjct:    8 SSSVKESLPPALGSTSQPPPVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKME 61
[Close]
BLAST of CF510216 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.077e-12
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   70 TTAQENLPPPLDSKAELPPLFDGTPRLYISYSCPFAHGAWITRNYKGLQDKIK 228
            ++ +E LP  L S +E P LFDGT RLYI Y CPFA  AWI RN+KGLQDKI+
Sbjct:    9 SSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIE 61
The following BLAST results are available for this feature:
BLAST of CF510216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ1.743e-1566.67Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI1.743e-1566.67Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21_MAIZE9.566e-1459.26Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
IN21A_ORYSJ3.077e-1262.26Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-731 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510216 ID=CF510216; Name=CF510216; organism=Citrus sinensis; type=EST; length=228bp
TAACTTTCTTCTTCAAAGCAAAAGAAAAGCATTCAGGAAACCTCTAGAGT
CTTACCTTCCTCAATGGCCACCACAGCGCAAGAGAATCTTCCTCCACCGT
TGGATTCGAAGGCCGAGCTACCACCTCTGTTCGATGGAACTCCCAGGTTG
TACATTTCTTACTCGTGCCCATTTGCTCATGGTGCGTGGATCACCAGGAA
CTACAAGGGATTACAAGACAAGATTAAG
back to top