CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:462..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 59/89 (66.29%), Postives = 76/89 (85.39%), Query Frame = -1
Query:  417 REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 683
            R +P I+ G IVQ+++ +PENKRR+S  KGIVI+R+NAGI TT R+RR++AGVGVE +FPLYSPNI EIKV+  +KVR+A+LYYLRDKL
Sbjct:  138 RPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKL 226          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 57/89 (64.04%), Postives = 77/89 (86.52%), Query Frame = -1
Query:  417 REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 683
            R +P+I+ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct:  130 RPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 218          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 56/89 (62.92%), Postives = 76/89 (85.39%), Query Frame = -1
Query:  417 REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 683
            R +P ++ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct:  134 RPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 222          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CALS8 (50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  417 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 686
            +++IPD KPG  V++   VI   + R+   +G+VI RR  G+S TF +RR+  GVGVE +FPL+SP I +I+V+ + KVRRAKLYY+R+K+
Sbjct:   13 RKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYGVGVERVFPLHSPRIEKIEVIRRGKVRRAKLYYIREKI 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ANATD (50S ribosomal protein L19 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  417 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 686
            +++IPD KPG  V++   VI   + RV   +G+VI RR  G+S TF +RR+  G+GVE +FPL+SP + +I+V+ + KVRRAKLYY+R+K+
Sbjct:   13 RKDIPDFKPGDTVRVYFKVIEGGRERVQAFEGLVIKRRGKGLSETFTVRRISYGIGVERVFPLHSPRLEKIEVIRRGKVRRAKLYYIREKI 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_THENN (50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  399 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 686
            ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ TF +RR+ + GVGVE +FP +SP + +I+V+ K KVRRAKLYYLRD    +R K
Sbjct:   16 KKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINRTFTVRRIGSHGVGVERIFPFHSPVVEKIEVVRKGKVRRAKLYYLRDVKGKIRIK 113          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = -1
Query:  417 IPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 677
            +P+I  G  V++ V+I E NK R    +GIVIA+RN+GI+ T  +RR+  GVGVE +F L+SP +  IK++ + KVRRAKLYYLRD++
Sbjct:   19 LPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIFQGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRV 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACST (50S ribosomal protein L19 OS=Bacillus stearothermophilus GN=rplS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 42/87 (48.28%), Postives = 64/87 (73.56%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++PD +PG  V++ V + E N+ R+   +G+VI RR AGIS TF +R++  GVGVE  FP+++P I +++V+ + KVRRAKLYYLR+
Sbjct:   16 DLPDFRPGDTVRVHVKVVEGNRERIQVFEGVVIKRRGAGISETFTVRKVSYGVGVERTFPVHTPKIAKLEVIRRGKVRRAKLYYLRE 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_THESQ (50S ribosomal protein L19 OS=Thermotoga sp. (strain RQ2) GN=rplS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  399 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 686
            ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+    +R K
Sbjct:   14 KKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_THEP1 (50S ribosomal protein L19 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  399 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 686
            ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+    +R K
Sbjct:   14 KKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK19_SPIOL3.300e-2866.2950S ribosomal protein L19, chloroplastic OS=Spinac... [more]
RK191_ARATH4.309e-2864.0450S ribosomal protein L19-1, chloroplastic OS=Arab... [more]
RK192_ARATH1.638e-2762.9250S ribosomal protein L19-2, chloroplastic OS=Arab... [more]
RL19_CALS84.043e-1849.4550S ribosomal protein L19 OS=Caldicellulosiruptor ... [more]
RL19_ANATD9.006e-1848.3550S ribosomal protein L19 OS=Anaerocellum thermoph... [more]
RL19_THENN1.176e-1750.0050S ribosomal protein L19 OS=Thermotoga neapolitan... [more]
RL19_CYAP42.006e-1751.1450S ribosomal protein L19 OS=Cyanothece sp. (strai... [more]
RL19_BACST2.620e-1748.2850S ribosomal protein L19 OS=Bacillus stearothermo... [more]
RL19_THESQ3.422e-1748.9850S ribosomal protein L19 OS=Thermotoga sp. (strai... [more]
RL19_THEP13.422e-1748.9850S ribosomal protein L19 OS=Thermotoga petrophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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