CF832017

Overview
NameCF832017
Unique NameCF832017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4194 contig Csv1_Contig4194:31..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 7.597e-60
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP 453
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  + P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAP 128          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.210e-59
Identity = 115/131 (87.79%), Postives = 124/131 (94.66%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVF 462
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +VE Q  + P VF
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVF 131          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.887e-59
Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP 453
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  VEPQ  + P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAP 128          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 6.431e-59
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP-PVF 462
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  + P P F
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAF 132          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.069e-57
Identity = 115/133 (86.47%), Postives = 124/133 (93.23%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQSMITPPVF 462
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+   EPQ++   P +
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSY 133          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 423
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.660e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 405
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.660e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 405
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.654e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 435
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of CF832017 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.261e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 435
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
The following BLAST results are available for this feature:
BLAST of CF832017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS172_ARATH7.597e-6091.4140S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS173_ARATH2.210e-5987.7940S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS174_ARATH2.887e-5990.6340S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH6.431e-5988.6440S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC2.069e-5786.4740S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17B_SCHPO2.541e-3967.8040S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_THEPA5.660e-3966.9640S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN5.660e-3966.9640S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17_BOVIN9.654e-3963.1140S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG1.261e-3863.1140S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832017 ID=CF832017|Name=CF832017|organism=Citrus sinensis|type=EST|length=704bp
CGACATCTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACAGC
AGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGACCGTGAAGA
AGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGAC
TTCCATACCAACAAGAAAATTTTGGAGGAGGTTGCTATCATCCCCTCGAA
GAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGATGAAGAGGA
TTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAG
CGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAAGACTGA
TGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTCTTGGCA
TGTCCGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATGATTACT
CCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAATTGAGG
CTTTGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATTAATCAGTAC
TTCTTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTTTACTATTTT
AAGAAGGGTGTTTAGTTAAAACTTGAACTCTGGCATCATACTTTAGTTGA
TTTAATGGACTTGTTTTGTCTTTTCATTTTATTTGTTTAAAAAAAAAAAA
AAAA
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