CF832137

Overview
NameCF832137
Unique NameCF832137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF832137 vs. ExPASy Swiss-Prot
Match: DYR_SCHPO (Dihydrofolate reductase OS=Schizosaccharomyces pombe GN=dfr1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 50/175 (28.57%), Postives = 77/175 (44.00%), Query Frame = 1 
Query:   67 LKLLCLHGFRTSGKFLQKQLSKWDPSIFAHFDMDFPDGIFPAGGKSD------------IEGIFPPPYFEWFQFNKEFTEYTNLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGK---VLKEHPPMKLFVSISGSKFRDPSICEVAYKDTINVKSAHFIGAKDWL 546
            LK+LCLHG+  SG    K++      +  + ++ FP G   A  ++D            + G      F WF+       Y + +E +  + +Y+   GPFDGL+GFSQGA + A+L      G+      +HPP K  V + G +   P   +  Y   +   S H  G  D L
Sbjct:    5 LKVLCLHGWIQSGPVFSKKMGSVQKYLSKYAELHFPTGPVVADEEADPNDEEEKKRLAALGGEQNGGKFGWFEVEDFKNTYGSWDESLECINQYMQEKGPFDGLIGFSQGAGIGAMLAQMLQPGQPPNPYVQHPPFKFVVFVGGFRAEKPEF-DHFYNPKLTTPSLHIAGTSDTL 178
The following BLAST results are available for this feature:
BLAST of CF832137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DYR_SCHPO4.516e-1428.57Dihydrofolate reductase OS=Schizosaccharomyces pom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832137 ID=CF832137; Name=CF832137; organism=Citrus sinensis; type=EST; length=592bp
TAAAATCTGACCCATTGAAATAGAAAAAAAATGGAAGGCCAAAAGGAAAG
CAACCATGGTAATAAGCTGAAATTATTATGCCTCCATGGATTTAGAACCA
GCGGGAAATTTCTTCAGAAACAACTTAGCAAGTGGGATCCTTCTATTTTT
GCTCACTTCGACATGGACTTCCCAGATGGGATTTTCCCGGCCGGCGGCAA
ATCTGATATAGAAGGCATATTTCCACCACCCTACTTCGAGTGGTTTCAAT
TCAACAAGGAGTTCACAGAGTACACAAACCTGGAAGAATGCGTATCTTAT
TTAACTGAATACATTACAAGCAATGGCCCTTTTGATGGTTTACTCGGCTT
CTCCCAGGGTGCAACACTGTCGGCTCTTTTGCTGGGCTACCAAGCACAGG
GGAAGGTGTTGAAGGAGCATCCACCGATGAAATTATTTGTGTCAATATCA
GGTTCAAAGTTTAGGGATCCAAGCATATGCGAAGTTGCCTACAAAGACAC
CATCAATGTGAAATCTGCCCACTTCATTGGAGCCAAGGACTGGTTGAGAT
TGCCCTCTGAGGAGCTGGCCACTGCCTTCCACAAACCCCTCA
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