CF832162

Overview
NameCF832162
Unique NameCF832162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832162 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26
Identity = 66/136 (48.53%), Postives = 78/136 (57.35%), Query Frame = -3
Query:  252 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXS-----GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 644
            MGSK SAS+ALF  +NILFFALV++                            CPRDALKLGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKA                 N C K VP GF+C
Sbjct:    1 MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of CF832162 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  252 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 503
            +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+                  + C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CF832162 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 50/126 (39.68%), Postives = 61/126 (48.41%), Query Frame = -3
Query:  252 LALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXSGAS---CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 620
            +ALFLA+++LF A    C                  S  S   CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKA                 N C +  P  F C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CF832162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA2.303e-2648.5314 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC4.982e-1341.6736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE6.507e-1339.68Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01G17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832162 ID=CF832162; Name=CF832162; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTGCTTCGAGACAACGAGTAATTCATCTTCTGCTATATGAAAA
ATACATAATAAAGAAAACACCACCACCAAGGCAAACAAATCAGACTTATT
CACTGTCATCTCGCAATCAAACCACCTGTATGAAAAATTATTAAACAACA
GAAATTACCAGTAACACACATTACCGTGCAGAACTCATAATCCCAGAACC
TGTAAATTAAATTAAAGACGAAGATACAGAAATATATGATCATCATTAAG
CACACTGGAAACCACGGGGCACACTCTTTGAACAGACGTTCAAAAGAAGG
CTGAGTGAAAGCGGGATATTAAGGTTGATGCCCAAAATGTTCGCTTTGAT
GGCAGTGCAAAGGCAAACAGCTGCCTCAAGATCAGCAAGGCCTTGAATAA
GAGTGCAGCATGGTTGTACCGGGGGTGTGCCAATAGTGACATTAAGCAAA
CCATTAAGCACGTTGGCGCATACACCTAGTTTAAGGGCATCTCTTGGGCA
GGAAGCCCCTGACGGGCTGGGAGTTGGCTTTGGCTTGGGTTTTGGTTTAG
GAGAAGGGCAAGAGCCACAGGCAGTGACTAGGGCAAAAAAGAGAATGTTG
ACTGCAAGAAAGAGAGCAAGTGAAGCTGAGGTTTTTGAACCCATCTCTTA
AATCCTAGCCACTAGCTTTTCCGTTATGATCC
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