CF832179

Overview
NameCF832179
Unique NameCF832179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:50..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832179 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 2 
Query:  188 VAQNDAGSAAGLDFSGNEVFNNPIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTYCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHS 601
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST S +ASP AQ +P+Q    C+  A+LP+ARRHS
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSST-SNVASPAAQPFPIQPISFCRSTADLPIARRHS 145
The following BLAST results are available for this feature:
BLAST of CF832179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF3B_ARATH2.559e-2042.75Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832179 ID=CF832179; Name=CF832179; organism=Citrus sinensis; type=EST; length=602bp
AAAACCCTTGCAGAGGCGAGGAAGCTGTGAAAGAAAATTAAAAAAATTGA
CAAAATATTAGGAGAAGAAGAGGAAGGAGCCTGGAAATTTCTCGAGTTTA
ATTCAAATAGACGAATTTGGGACTGATGATGAAGTGAACCCGAAGGCTGA
GGCCGGAATGGAAGTAAACGATAACAAGAAGCATGAGGTTGCGCAAAACG
ACGCCGGATCTGCTGCAGGGCTTGATTTTTCGGGGAACGAGGTGTTTAAC
AACCCCATCAGGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGA
CCTTGCTCCAACTCAGCTTACGATCTTCTATGGCGGAAAAGTGTGTGTAT
TTGATGCAATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCC
TCTTCTGCCACTGTTACTAACACTAGTGACATGAAGACGGACAATACCTA
CTGTCCTGCCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCA
CTGCAAGTGCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGG
AATCTCCTCTGTAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTC
CC
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