CF832308

Overview
NameCF832308
Unique NameCF832308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.244e-86
Identity = 152/193 (78.76%), Postives = 167/193 (86.53%), Query Frame = -3
Query:  244 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 822
            MKHNNVIPNGHFKKHWQNYVKTWFNQP               KIFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIGI+VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.908e-84
Identity = 152/193 (78.76%), Postives = 163/193 (84.46%), Query Frame = -3
Query:  244 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 822
            MKHNNVIPNGHFKKHWQNYVKTWFNQP               KIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIGIS+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK+T +MKS  AYDK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.245e-83
Identity = 151/193 (78.24%), Postives = 163/193 (84.46%), Query Frame = -3
Query:  244 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 822
            MKHNNVIPNGHFKKHWQNYVKTWFNQP               KIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIGI+VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK+T +MKS KA+DK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.455e-82
Identity = 149/193 (77.20%), Postives = 163/193 (84.46%), Query Frame = -3
Query:  244 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 822
            MKHNNVIP+ HF+KHWQNYVKTWFNQP               KIFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.838e-75
Identity = 140/193 (72.54%), Postives = 154/193 (79.79%), Query Frame = -3
Query:  244 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 822
            MKHNNVIPNGHFKK W+NYVKT FNQP               KIFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIGISVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+R+E  N+RH G R
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.757e-65
Identity = 125/186 (67.20%), Postives = 141/186 (75.81%), Query Frame = -3
Query:  241 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARL 798
            NGHFKKHWQNYVKTWFNQP               KI PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GAR+
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.807e-56
Identity = 107/193 (55.44%), Postives = 134/193 (69.43%), Query Frame = -3
Query:  244 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 822
            ++ N+++PNGHF K WQ +VKTWFNQP                 FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+GI+VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK+T DMK    Y KLRIER N R  G R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.017e-51
Identity = 106/190 (55.79%), Postives = 128/190 (67.37%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N +I N HF K WQ  V+TWFNQP               +I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIGISVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.581e-50
Identity = 101/193 (52.33%), Postives = 129/193 (66.84%), Query Frame = -3
Query:  244 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP-TVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 819
            K NN+IPN H+ K WQ +VKTWFNQP                +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIGI+VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  V+  +VT+D K FKA+  LR  R + R  G R
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 4.725e-49
Identity = 100/190 (52.63%), Postives = 124/190 (65.26%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N +I N HF K WQ  V+TWFNQP               +I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIGI+VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI +         +T++ K F A+  LR+ RAN R FG R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195          
The following BLAST results are available for this feature:
BLAST of CF832308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH8.244e-8678.7660S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_BRANA5.908e-8478.7660S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA2.245e-8378.2460S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH1.455e-8277.2060S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH3.838e-7572.54Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC2.757e-6567.2060S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW6.807e-5655.4460S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE1.017e-5155.7960S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME5.581e-5052.3360S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU4.725e-4952.6360S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832308 ID=CF832308; Name=CF832308; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTAAAAAACAGACAACCATAGGGTAGGTCCCTTGC
AAATAATATAACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTT
CAAACCTAAAGCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAAT
TGAAATGTAAAATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTG
TTTACTTCTTCTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCA
CCAAAATGGCGCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTT
GAAGGACTTCATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCT
CAAGAGTAATGGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAAT
TCCTCAGGAGCAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAA
AACAACCAACTTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAA
GACCCTCAAGAGAACGGTTCTTGCGTCGATGATCGACTGAAATGCCAATT
GTTGGAGCCAGTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGT
AAAGCCTCTGCCAGCCCTTAATTTCATGTTATATTTCAAAGTCTGGCCAT
GAACGACGGGGCGAAGAGGACCAGCAGTAGGGCGAGGGAAGATTTTAACG
GCCTTCTTTTGACGAGCAACTCGTCGTCGATTTTTGCGAGCCGGTTGGTT
AAACCAAGTCTTGACATAGTTCTGCCAATGCTTCTTAAAGTGCCCATTTG
GAATTACATTGTTGTGCTTCATTTTTGTTTACAGAG
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