CF832330

Overview
NameCF832330
Unique NameCF832330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10176 contig Csv1_Contig10176:16..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832330 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.044e-17
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  147 LQYKLIPVLNGAGGFITHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKGSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPRAETLLNWVKIEKAGNFSYGGGYKIVHCPSVCLSCPRRCNKIG 566
            +QY ++  ++GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+ STDVN+ F V +  + C+   +W++D+YD+      + T G +G P   TL +W KIEKAG      GYK   CPSVC SC   C+ IG
Sbjct:   43 VQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL----GYKFRFCPSVCDSCTTLCSDIG 184          
BLAST of CF832330 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 58/173 (33.53%), Postives = 88/173 (50.87%), Query Frame = 3
Query:   87 ASHQTLNLS*ISLATRSNPPLQYKLIPVLNGAGGFITHLGT--NGQ--CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKGSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPRAETLLNWVKIEKAGNFSYGGGYKIVHCPSVCLSCPRRCNKIGV 569
            A +  L++    L T +N    Y ++PVL   GG +T   T  NG   CP  V+Q     +    L   P +N K  +V+ STD+N+ F    +  PC      +W++D YD+      +  GG +G+P  ET+ +W KIE+   F   G YK+V CP+VC SC  +C  +G+
Sbjct:   32 APNPVLDIDGEKLRTGTN----YYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGI 193          
The following BLAST results are available for this feature:
BLAST of CF832330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC9.044e-1737.4121 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.228e-1533.53Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01L03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832330 ID=CF832330; Name=CF832330; organism=Citrus sinensis; type=EST; length=575bp
GCCTTCCAGAGCCAATAAAATGAAGACTTCATTGATAACAACACTCTCCT
TCCTTATCCTTACCTTGGCCACGCAGCCTCTATTGAGCATCTCATCAAAC
TCTGAACCTGTCTTAAATATCATTGGCAACAAGGTCAAATCCACCACTCC
AGTATAAACTTATCCCAGTCCTAAATGGCGCCGGTGGATTCATCACACAC
CTAGGCACAAATGGACAGTGTCCCTTGGACGTTATCCAATTAAGTTCTCC
TAGCGAAAGGGGAGATAATTTAAGATTACTTCCGTACGACAATTACAAAA
TTGTCAAAGGATCCACTGATGTCAACCTGAGATTCCCCGTAAAAGTTTCT
GTTAAGCCCTGTAATGAAGAACCATTGTGGAAAGTTGATAGCTATGACGA
TCCATTAATTGTAACCGGCGGAAGTGAGGGCCACCCAAGAGCTGAAACGT
TGCTAAATTGGGTTAAGATTGAGAAAGCTGGAAATTTTTCATATGGTGGA
GGATACAAGATTGTCCATTGTCCGAGTGTCTGTCTATCTTGTCCTAGACG
CTGCAACAAAATTGGCGTTTCAACT
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