CF832366

Overview
NameCF832366
Unique NameCF832366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.815e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAK+QDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF832366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_CHLRE2.815e-3192.11Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBL1_ORYSJ3.677e-3190.79Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_WHEAT3.677e-3192.11Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN3.677e-3192.11Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU3.677e-3192.11Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.677e-3192.11Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.677e-3192.11Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.677e-3192.11Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.677e-3192.11Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.677e-3192.11Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832366 ID=CF832366; Name=CF832366; organism=Citrus sinensis; type=EST; length=645bp
AAAACAGATAACCATTTAATTCCATTGGTCAAGCAAACAAGTATATAGTC
AAACAAAATTACCAGAGAGTCGTAATTTTTGAACCACAAAAACCATAGTA
ATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCGATCAATCA
CCGCCAGCCTTCTGGTAAACATAGGGGAGTCCACACTTGCCGCAGTAGTG
CCTGGAAAAGTGGTTAGCCATGAAGGTGCCGGCTCCACACTCAGCATTCG
GACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGACCTTGTAA
AACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTT
CGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGAC
GGAGGACGAGGGGGAGTGTTGACTCCTTTTGGATGTTGAAGTCGGCTAGG
GGTCTGCCGTCCTCGAGCTGCTTTCCGGGGAAAATGAGACGCTGCTGGTC
CGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGACGATGG
TGCCCGATGATTCTACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTC
ACGAAGATCTGCATGGCTGCCGATGAGGAGAGACCCAGCAAATTT
back to top