CF832442

Overview
NameCF832442
Unique NameCF832442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:795..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.667e-64
Identity = 111/142 (78.17%), Postives = 128/142 (90.14%), Query Frame = -1
Query:  263 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG---RNVCGVDSMVSSVAAIHTT 679
            EKDYPYTG+DG  CKFDKSKI A+V NFSV+S DE Q++ANL+KHGPLA+GINA +MQTYIGGVSCPYICG++LDHGVL+VGYG+SGFAPIR K+KPYWIIKNSWGENWGENGYYKIC G   RN CGVDSMVS+V+A+H +
Sbjct:  229 EKDYPYTGSDG-KCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSAVHAS 369          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.055e-63
Identity = 110/141 (78.01%), Postives = 128/141 (90.78%), Query Frame = -1
Query:  260 REKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIHTTS 682
            REKDYPYTGTDGGSCK D+SKI A+VSNFSV+S +EDQ+AANL+K+GPLAV INA +MQTYIGGVSCPYIC + L+HGVL+VGYGS+GF+  R KEKPYWIIKNSWGE+WGENG+YKIC GRN+CGVDS+VS+VAA  TTS
Sbjct:  223 REKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA--TTS 361          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.628e-62
Identity = 108/142 (76.06%), Postives = 128/142 (90.14%), Query Frame = -1
Query:  257 REKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIHTTSS 682
            +E+DYPYTG DG +CK DKSKI A+VSNFSVIS DE+Q+AANLVK+GPLAV INA +MQTYIGGVSCPYIC + L+HGVL+VGYG++G+AP RFKEKPYWIIKNSWGE WGENG+YKIC GRN+CGVDSMVS+VAA  +T++
Sbjct:  226 KEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATVSTTA 367          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.348e-60
Identity = 106/137 (77.37%), Postives = 120/137 (87.59%), Query Frame = -1
Query:  275 REKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAA 682
            +EKDY YTG DG SCKFDKSK+ A+VSNFSV++ DEDQ+AANLVK+GPLAV INA WMQTY+ GVSCPY+C K  LDHGVL+VG+G   +APIR KEKPYWIIKNSWG+NWGE GYYKIC GRNVCGVDSMVS+VAA
Sbjct:  223 QEKDYAYTGRDG-SCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAA 358          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = -1
Query:  260 GPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIHTTS 544
            GPLAV INA +MQTYIGGVSCPYIC + L+HGVL+VGYGS+G+APIR KEKPYW+IKNSWGENWGENGYYKIC GRN+CGVDSMVS+VAA+HTTS
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTS 95          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 62/132 (46.97%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  284 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 679
            E  YPYT   G  C F+ + I A +SNF++I  +E  MA  +V  GPLA+  +AV  Q YIGGV         LDHG+LIVGY +     I  K  PYWI+KNSWG +WGE GY  +  G+N CGV + VS+
Sbjct:  211 ESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVST 340          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  284 EKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPY--ICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 679
            E +YPY       C F+++     V+ F  +   +E  M   L+ +GP+++GINA  MQ Y GGVS P+  +C K  LDHGVL+VGYG S + P   K  PYWI+KNSWG  WGE GYY++  G N CGV  M +S
Sbjct:  477 EAEYPYKAKKN-QCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATS 610          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 58/135 (42.96%), Postives = 78/135 (57.78%), Query Frame = -1
Query:  284 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 679
            E DY Y G    SC F   K    +++   +S +E ++AA L K GP++V INA  MQ Y  G+S P   +C  +L DH VL+VGYG+         + P+W IKNSWG +WGE GYY +  G   CGV++M SS
Sbjct:  354 EDDYSYQG-HMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRS-------DVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 480          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 52/135 (38.52%), Postives = 82/135 (60.74%), Query Frame = -1
Query:  284 EKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 679
            E +YPY   +   C      +A  +++   ++ DE ++AA L  +  ++VG+NA+ +Q Y  G+S P+   C KYL DH VL+VGYG S       K +P+WI+KNSWG  WGENGY+++  G   CG++++ +S
Sbjct:  188 EDNYPYDAKNE-KCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSE------KNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATS 315          
BLAST of CF832442 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 54/139 (38.85%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  269 EKDYPYTGTDGGSCKFDKSKIAAAVSNFS-VISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 679
            E DYPY GT G  CK D  K A +VS+    I  +E+ +   L+  GP+A+ I+A  + TY  G+   + C    L+H VL+VGYG+ G          YW +KNSWG +WGE+GY+++    N CG+++ +++ A IH
Sbjct:  209 EIDYPYQGTKG-VCKIDNKKFALSVSSCKRYIFQNEENLKKELITMGPIAMAIDAASISTYSKGII--HFCENLGLNHAVLLVGYGTEGGVS-------YWTLKNSWGSDWGEDGYFRVKRNINACGLNNQLAASATIH 337          
The following BLAST results are available for this feature:
BLAST of CF832442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CYSP1_MAIZE3.667e-6478.17Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
A494_ARATH4.055e-6378.01Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
RD19A_ARATH2.628e-6276.06Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA9.348e-6077.37Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
PAPA5_CARPA1.003e-4583.16Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CYSP1_DICDI4.235e-2846.97Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CPR1_DROME4.383e-2545.59Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATF_HUMAN9.138e-2342.96Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATL_SCHMA1.320e-2138.52Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATV_NPVAH2.940e-2138.85Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832442 ID=CF832442; Name=CF832442; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTTTTTTTTTAAAAAAAGAAAATATTAATACCATCTTCAATAA
CAATTCTGTAGCATGGTTAACTATAAAATAGATAAATATTACATTCTGAC
ATGACATATGCTTAAATATTACAAGAGCATAGAAAGTTCATGCCTCAGCC
CAGGCATGTAGGCATCGTTATAATTGCAGACGGATATTTAAAAGGATATC
CTATAATATCTAGGTACAGAAGCTCCACTTGCCTAGCACAACCTCCATAA
TGTCTAGCTTGAGGTTGTATGGATAGCAGCTACAGATGAGACCATGGAGT
CGACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCT
CCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTT
GAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCCACGATAAGCACTC
CATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATA
TATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTT
CACCAAATTTGCAGCCATTTGATCTTCATCAGAGGAAATAACACTGAAAT
TAGATACAGCTGCAGCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCG
TCGGTCCCAGTGTAAGGGTAGTCCTTCTCTCG
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