CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 7.891e-80
Identity = 148/196 (75.51%), Postives = 167/196 (85.20%), Query Frame = 1
Query:   34 KLRGRTPLG------------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            +L+G+TP G            GGA A QFG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+SGAGNIFIKNLD++IDHKALHDTFS+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKAIEKLNGMLLNDKQVYVG FL
Sbjct:    5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFL 200          

HSP 2 Score: 114.005 bits (284), Expect = 5.554e-25
Identity = 60/168 (35.71%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++    L+D F+  G +VS +V  D S+ +S GYG+V ++N + A +A+E LN   LN K + V        RD +  K+   N+++KNL ++     L + F  +G I S  V  D  G+SKG+GFV F+N + A +A+E LNG   +DK+ YVG
Sbjct:  122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVG 288          

HSP 3 Score: 111.309 bits (277), Expect = 3.600e-24
Identity = 68/185 (36.76%), Postives = 101/185 (54.59%), Query Frame = 1
Query:   67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            + AN+   T++YV +L  + TD  L + F + G++ S  V +D    +S G+G+VNF NA +AARA+E LN    + K   V      S R+  LR            K  + N+++KNLD +I  + L + FS FG + S KV  D NG SKG GFV F   E A +A+ +L+G ++  K +YV
Sbjct:  207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.828e-60
Identity = 109/172 (63.37%), Postives = 140/172 (81.40%), Query Frame = 1
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            NA+Q  + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH +
Sbjct:   42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 213          

HSP 2 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 52/170 (30.59%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L++ + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKN+D+ +  +   + F  FG I S  ++ D  G+S+G+GFV F   ESAQ A++++N   +  +++YVG
Sbjct:  135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVG 303          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.387e-60
Identity = 109/172 (63.37%), Postives = 140/172 (81.40%), Query Frame = 1
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            +ANQ  + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH +
Sbjct:   45 SANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 216          

HSP 2 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 52/170 (30.59%), Postives = 97/170 (57.06%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+G+GFV F   +SAQ A++++N   +  +++YVG
Sbjct:  138 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVG 306          

HSP 3 Score: 82.8037 bits (203), Expect = 1.371e-15
Identity = 58/222 (26.13%), Postives = 97/222 (43.69%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD---------------------------------------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++Y+ +++  VTD +   +F + G++ S  + RD    +S G+G+VNFS    A  A++ +N   + G+ +   R    H R+  LRK                N+++KNL   +D + L + FS FG I S KV  D                                             + G+SKG+GFV F + + A KA+ ++N  ++N K +YV
Sbjct:  233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 453          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.387e-60
Identity = 109/171 (63.74%), Postives = 139/171 (81.29%), Query Frame = 1
Query:   73 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            ANQ  + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH +
Sbjct:   48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 218          

HSP 2 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 56/170 (32.94%), Postives = 96/170 (56.47%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L++ + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKNLD  ID       F  FG I S  ++ D  G+S+G+GFV F   ESAQ A+E++N   +  +++YVG
Sbjct:  140 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVG 308          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.387e-60
Identity = 109/172 (63.37%), Postives = 139/172 (80.81%), Query Frame = 1
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            N NQ  + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH +
Sbjct:   44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 215          

HSP 2 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 51/170 (30.00%), Postives = 96/170 (56.47%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L++ + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   NI+IKN+D  +  +     F  FG I S  ++ D  G+S+G+GFV +   ESAQ A+++++   +  +++YVG
Sbjct:  137 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVG 305          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.118e-60
Identity = 112/165 (67.88%), Postives = 136/165 (82.42%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            +SLY GDL+  VT++ L+DLF  +  VVSVRVCRD   RRSLGY Y+NFSN  +A RA+E LN+TPL  +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKVA D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+
Sbjct:   49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFI 212          

HSP 2 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP------IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+A++ +  L++ F+  G ++S +V  D+ T RS GYG+V F   + A  A++ LN   +N K       IR     RD +       N+++KNL K I    L  TF  FG I S  V  D +G S+ +GFV F+  E+A  A+EK+NG+ L D  +YVG
Sbjct:  134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVG 302          

HSP 3 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++YV +L   + + +L   F + G + S  V RD S   S  +G+VNF   + AA A+E +N   L    + V      S R+  LR            KS   N+++KNLD ++D + L + FS +GN+ S KV  +  G S+G+GFV + N E A +A+ ++NG ++  K +Y+
Sbjct:  229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 4.072e-60
Identity = 113/181 (62.43%), Postives = 138/181 (76.24%), Query Frame = 1
Query:   49 TPLGGGANANQFGTT----SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 579
            TP    + A   GT     SLYVG+L+ +VT++ L++LFN +G V S+RVCRD  TRRSLGY YVNF N ++  +AL+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCKVA D  G +KGYGFV FD+ ESA  AIE +NGMLLNDK+VYVGH
Sbjct:   62 TPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242          

HSP 2 Score: 107.842 bits (268), Expect = 3.981e-23
Identity = 62/177 (35.03%), Postives = 99/177 (55.93%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKS------------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++Y+ +L+  +T+ +  DLF Q G++ S+ + +D + +   G+G+VN++N + A +A++ LN     GK +   R    H R+  LRK                N+FIKNL   +D + L   FSAFG I S K+ TD  G+SKG+GFV +   E A KA+ ++N  +L  K +YV
Sbjct:  261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPR-GFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436          

HSP 3 Score: 102.834 bits (255), Expect = 1.280e-21
Identity = 57/172 (33.14%), Postives = 97/172 (56.40%), Query Frame = 1
Query:   79 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            + GT ++++ +L+  + +  L+D F+  G+++S +V  D     + GYG+V+F + + A  A+E +N   LN K + V +  S R+   +    K+   N++IKNLD  I  +   D F  FG I S  +  D N + +G+GFV + N E AQKA+++LN      K++YVG
Sbjct:  164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVG 334          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.072e-60
Identity = 111/172 (64.53%), Postives = 139/172 (80.81%), Query Frame = 1
Query:   67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            A A+ +   SLYVGDL ++VT++ LY+ F+  G V+S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F
Sbjct:    3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173          

HSP 2 Score: 112.464 bits (280), Expect = 1.616e-24
Identity = 69/199 (34.67%), Postives = 109/199 (54.77%), Query Frame = 1
Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R       GA A +F  T++Y+ +    V D  L +LF+Q G+ +SV+V RD    +S G+G+V++   ++A +A+E +N   ++GK I                R     +   + +    N++IKNLD  ID + L   FS FG+I S KV  + +G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSRKEREAELGAKAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365          

HSP 3 Score: 107.842 bits (268), Expect = 3.981e-23
Identity = 58/170 (34.12%), Postives = 99/170 (58.24%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GY +V+F   + A +A+E +N   LN + + V  +  R     + GA      N++IKN  + +D ++L + FS FG  LS KV  D NG+SKG+GFV ++  E A KA+E++NG  ++ K ++VG
Sbjct:   97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 109/171 (63.74%), Postives = 139/171 (81.29%), Query Frame = 1
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +A  +   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173          

HSP 2 Score: 117.472 bits (293), Expect = 5.024e-26
Identity = 64/170 (37.65%), Postives = 101/170 (59.41%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L + F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264          

HSP 3 Score: 110.538 bits (275), Expect = 6.141e-24
Identity = 71/200 (35.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R       GA A +F  T++Y+ +   ++ D +L +LF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSRKEREAELGARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 109/171 (63.74%), Postives = 139/171 (81.29%), Query Frame = 1
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +A  +   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173          

HSP 2 Score: 117.472 bits (293), Expect = 5.024e-26
Identity = 64/170 (37.65%), Postives = 100/170 (58.82%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V        R+  L  R     N++IKN  + +D + L + F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264          

HSP 3 Score: 108.997 bits (271), Expect = 1.787e-23
Identity = 70/200 (35.00%), Postives = 109/200 (54.50%), Query Frame = 1
Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK +       GA A +F  T++Y+ +   ++ D +L +LF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSQKEREAELGARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365          
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PABP2_ARATH7.891e-8075.51Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP_ASPOR1.828e-6063.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI2.387e-6063.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC2.387e-6063.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL2.387e-6063.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_ARATH3.118e-6067.88Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_SCHPO4.072e-6062.43Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN4.072e-6064.53Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP1_RAT6.945e-6063.74Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE6.945e-6063.74Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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