CF832558
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine synthase 1-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27 Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDL 471 T++YA+MLE AG LL VHGRT+++K A W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W +L EYL + ++P P +R+H+ KL ++ +R +L Sbjct: 157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine synthase 1-like OS=Homo sapiens GN=DUS1L PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26 Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1 Query: 16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDL 471 T++YA+MLE AG LL VHGRT+++K A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W +L EYL + ++P P +R+H+ KL ++ +R +L Sbjct: 157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine synthase 1-like OS=Mus musculus GN=Dus1l PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26 Identity = 61/152 (40.13%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDL 471 T++YA+MLE AG LL VHGRT+++K A W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W +L EYL + ++P P +R+H+ KL ++ +R +L Sbjct: 157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15 Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1 Query: 16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGEWFRIQPGVRGDL 471 T+ YAKM+ AG S+LAVHGR R++K ADW I+ ++ L + ANGN+ H +D+ +C++ TG +GVLSAE L NP +F S ++ +D D+ EYL + ++ + I+ H+ KL+ I +R L Sbjct: 158 TLDYAKMILKAGASILAVHGRLREQKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP-------PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTDIRSKL 307
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine synthase 1 OS=Saccharomyces cerevisiae GN=DUS1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15 Identity = 49/162 (30.25%), Postives = 81/162 (50.00%), Query Frame = 1 Query: 16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLV----EYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDLNAQN 483 ++ YAKM+ DAG L VHGR R++K K A+W IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP +F +T +K+ + D ++ + +K C++ ++SH K+L + +R L N Sbjct: 170 SLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK---------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTLATMN 322
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: YQI2_CAEEL (Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13 Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQP-GVRGDLNAQNRLTFEFLYNLVD 519 T+ + E AG + L VHGRT ++ D A++ VK+++ +P++ANG + E+ E+TG +G+++A LL+NPALFAG +D + +++L +Y + W + H+ +L F Q V +LN + + FL NL+D Sbjct: 135 TVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHT----------------PSDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQRRVFNELNGRLAID-HFLNNLLD 283
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_BACSU (Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis GN=dus1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13 Identity = 50/169 (29.59%), Postives = 89/169 (52.66%), Query Frame = 1 Query: 13 FTIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY----------PVPWRMIRSHVHKLLGEWFRIQPGVRGDLNAQNRL 489 F +K A+ +E AG +A+HGRTR + + A+W+ IK VK ++ IPV+ NG+V+ +D ++ L+ETG +GV+ + L NP + +RT +++ + G L + + E + +C+ + V R +R H W+ GV+G+ N +N + Sbjct: 152 FAVKNAQAVERAGGKAVALHGRTRVQM--YEGTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMI--YRTVQYL-------ETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKH-----AAWY--LKGVKGNANVRNEI 302
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS4_SCHPO (tRNA-dihydrouridine synthase 4 OS=Schizosaccharomyces pombe GN=dus4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12 Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 31 KMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 297 +++E +G ++ VHGRTR +D F + +AI+ V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W Sbjct: 164 QVIEKSGADIITVHGRTR--QDRSSFPVNLDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_SYNY3 (Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp. (strain PCC 6803) GN=dus1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12 Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 19 IKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS-EEISKDGNLDQADLLVEYLKLCEKY 384 +++A+ L+DAG +L +HGRTR + G RA W I VK AL IPV+ANG++ +E CLEETG +GV+ + L P ++VG E K G +A + E L +++ Sbjct: 184 VEFAQRLQDAGAQMLTLHGRTRAQ--GYNGRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYP----------FLVGEIEHFFKTGEKRKAPTVAEKLTCAQEH 294
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS_AQUAE (Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus GN=dus PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12 Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 1 Query: 37 LEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL 366 L+ AG SL+A+H RT K G +A W+ IK K +P++ +G+V+ D+++ EET C+GV+ + L NP +F F+ I + D L++ ++ EY+ Sbjct: 155 LQKAGVSLIAIHARTA--KQGFSGKALWHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRDIEVGLKERMDFILEELSMMTEYM 262 The following BLAST results are available for this feature:
BLAST of CF832558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832558 ID=CF832558; Name=CF832558; organism=Citrus sinensis; type=EST; length=669bpback to top |