CF832604

Overview
NameCF832604
Unique NameCF832604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:708..1351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.100e-28
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = -3
Query:  426 SVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV 623
            SVKG+ T W+S+SRNWGQNWQSNA LVGQALSFRVTGSDRRTSTSWN+ P+NWQFGQTF GKNFRV
Sbjct:  192 SVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFRV 257          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.742e-28
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = -3
Query:  426 VSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV 626
            VSVKG+ T W+ MSRNWGQNWQSNA L+GQ+LSFRVT SDRR+STSWNVAPA WQFGQTFSGKNFRV
Sbjct:  196 VSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFRV 262          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.042e-27
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = -3
Query:  426 SVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV 623
            SVKG+ T W+S++RNWGQNWQSNA LVGQ+LSFRVT SDRRTSTSWN+AP+NWQFGQTF GKNFRV
Sbjct:  195 SVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFRV 260          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = -3
Query:  426 SVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV 623
            SVKG +T W+ MSRNWGQNWQSN+ LVGQALSFRVTGSDRRTSTSWN APA W FGQTF GKNFRV
Sbjct:  199 SVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFRV 264          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = -3
Query:  426 VSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV 626
            + VKG +T W++MSRNWGQNWQSN+ LVGQ+LSFRVT SDRR+STSWN+APANW+FGQTF GKNFRV
Sbjct:  191 LGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFRV 257          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = -3
Query:  426 VSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV 626
            VSVKG+NTQWL +SRNWGQNWQSNA LVGQ+LSFRV  SD R+STS N+AP+NWQFGQT+SGKNFRV
Sbjct:  192 VSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFRV 258          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = -3
Query:  429 VSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFR 626
            VS+KG NT+W SMSRNWGQNWQSNA+L GQALSF+VT SD RT  S N  P NW FGQT++GK FR
Sbjct:  187 VSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.234e-20
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = -3
Query:  429 VSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFR 626
            V+VKG+ T+W  MSRNWGQNWQSN  L GQALSF+VT SD RT  S N+APA+W FGQTF+G+ FR
Sbjct:  188 VAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = -3
Query:  432 VSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNF 626
            V +KG+ T WL M RNWGQNW  NA L  QALSF VT SDR T TS+NV+P NW +GQTF GK F
Sbjct:  199 VKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of CF832604 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = -3
Query:  429 SVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFR 623
            ++KG+ T W +MSRNWGQNWQSN+ L GQALSF+VT SD RT  S+N APA W +GQTF+G  FR
Sbjct:  185 AIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
The following BLAST results are available for this feature:
BLAST of CF832604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
EXPA4_ARATH2.100e-2884.85Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA3_ARATH2.742e-2883.58Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP16_ARATH1.042e-2781.82Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA7_ORYSJ1.777e-2783.33Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH3.960e-2777.61Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA9_ARATH3.352e-2680.60Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXP14_ARATH8.544e-2271.21Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP15_ARATH1.234e-2068.18Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP13_ARATH2.327e-1964.62Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ARATH2.327e-1964.62Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832604 ID=CF832604; Name=CF832604; organism=Citrus sinensis; type=EST; length=628bp
TTTTTTTTTTCTTTTTTTGAAACATTGAAGATTAATTATACCATATATAG
TAAATCATATCAGCTGCGGGCTACATGTTTTTTTAGTTTGTTCCTGCAGC
CACTTCAGCCACTACACTTTCACCCACGAGACTGGTTTTTACTATTACCA
CCAGCCCCGGTAAACAAGTCAAACAAAACAAAAACAGTAAAAACTGAAAA
TAAACAGAAGTTACCCCACCCACACACACTACATCCTTTTGTCACTTTTT
TCTACTACCTATCACCATCATTTTGATTTTGACCCACTTTTACTTTAAAA
ACCTAACACGACCCCCCATAACCCCCTTTTCCTTCGCTTCAATTTTTTTT
CCGGGAAAATAAAGGAGAAAAAAATCTTGGAAGGCGGGAAACATGAAAAT
GTTGAAAAAAGATTAAATATCACTAGACGCGGAAATTCTTTCCCGAAAAG
GTTTGACCGAACTGCCAATTCGCTGGCGCCACGTTCCAAGAGGTTGAGGT
CCTTCTGTCACTGCCCGTGACTCTAAACGAAAGTGCCTGGCCCACGAGCT
GAGCGTTGGATTGCCAGTTTTGTCCCCAGTTGCGGCTCATGCTCAGCCAT
TGGGTGTTGGCCCCTTTCACGCTCACGC
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