CF832673

Overview
NameCF832673
Unique NameCF832673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:240..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_SYNY3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechocystis sp. (strain PCC 6803) GN=fabZ PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.176e-39
Identity = 85/145 (58.62%), Postives = 109/145 (75.17%), Query Frame = -2
Query:  196 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF-FAGIDKVRFRKPVIAGDTLVMRMTL--VKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 621
            T   I +I D+LPHR+PF LVDR+I++ PG  AV +KNVTIN+ FFPGH PDRPIMPGVL+VE+MAQVGG+++ Q  + G R  FF FAGID VRFR+PV+ GD L+M + L   KLQ+   IAKM+G+A V G++VC GE L +
Sbjct:   22 TQFTIQEISDLLPHRYPFALVDRIIDFQPGKCAVGLKNVTINEPFFPGHIPDRPIMPGVLIVESMAQVGGVILTQ--LPGMRGKFFAFAGIDGVRFRRPVVPGDQLIMTVELQSFKLQR---IAKMQGEARVDGQLVCGGEMLFS 161          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_THEEB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.300e-38
Identity = 78/142 (54.93%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  196 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 621
            TV+ + +++ +LPHR+PFLLVDR+I+Y P   AV +KNVTIN+ FF GHFP RPIMPGVL+VEA+AQVGG+V++Q      + +  FAGIDKVRFR+PV+ GD L++R  L+ + K+  I KM+G+A V G++VCEGE + +
Sbjct:   11 TVLTVTELQQLLPHRYPFLLVDRIIDYVPEKYAVGLKNVTINEPFFQGHFPGRPIMPGVLIVEALAQVGGVVLMQMNWAKDKLS-VFAGIDKVRFRRPVVPGDQLILRAELL-VVKQQRIGKMQGRAEVNGQLVCEGEMMFS 150          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_MICAN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Microcystis aeruginosa (strain NIES-843) GN=fabZ PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.452e-38
Identity = 77/143 (53.85%), Postives = 106/143 (74.13%), Query Frame = -2
Query:  196 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF-FAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 621
            T   + +IR +LPHR+PF LVDR+I+Y PG  AV +KNVTIN+ FFPGH P+RP+MPGVL+VE+MAQVGG+++ Q  + G +  FF FAGIDK RFR+PV+ GD L+M + L+   K   IAKM+G+A V G++  +GE + +
Sbjct:   17 TTFTVEEIRQLLPHRYPFALVDRIIDYVPGQKAVGLKNVTINEPFFPGHIPNRPLMPGVLIVESMAQVGGVILTQ--LPGMKGKFFAFAGIDKTRFRRPVVPGDQLIMTVELLSF-KMNKIAKMQGEARVDGQLAAQGEMMFS 156          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. GN=fabZ PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.426e-38
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = -2
Query:  196 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 624
            P V    QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP+RPIMPGVL+VEAMAQ+GG+V+ + P+V G      FAGID VRFR+PV+ GD L++   L+ +++R  I KM  +A VGG++V EGE + +
Sbjct:   23 PPVFTTEQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVEAMAQIGGIVLTKLPDVAGRLA--LFAGIDGVRFRRPVLPGDQLLLSADLLTIRQR-RIGKMFCRAQVGGQLVTEGELMFS 163          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain JA-3-3Ab) GN=fabZ PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 83/145 (57.24%), Postives = 107/145 (73.79%), Query Frame = -2
Query:  196 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-QKRFGIAKMEGKAYVGGEVVCEGEFLMA 624
            P V   +QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP+RPIMPGVL+VEAMAQ+GG+V+ + P+V G      FAGID VRFR+PV+ GD L++   L+ + QKR G  KM  +A VGG++V EGE + +
Sbjct:   23 PPVFTTDQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVEAMAQLGGIVLTKLPDVAGRLA--LFAGIDGVRFRRPVLPGDQLLLSANLLTIRQKRIG--KMFCRAQVGGQLVTEGELMFS 163          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_ANAVT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fabZ PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 82/144 (56.94%), Postives = 106/144 (73.61%), Query Frame = -2
Query:  196 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-QKRFGIAKMEGKAYVGGEVVCEGEFLMA 621
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VEAMAQVGG+VM Q P + G    F FAGIDKVRFR+ V+ GD LVM + L+ + Q+RFG  KM+ +A V G++  EGE + +
Sbjct:   23 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQLPNLEGGL--FVFAGIDKVRFRRQVVPGDQLVMTVELLWIKQRRFG--KMQARAEVDGQLAAEGELMFS 162          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_ANASP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena sp. (strain PCC 7120) GN=fabZ PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.877e-37
Identity = 82/144 (56.94%), Postives = 106/144 (73.61%), Query Frame = -2
Query:  196 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-QKRFGIAKMEGKAYVGGEVVCEGEFLMA 621
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VEAMAQVGG+VM Q P + G    F FAGIDKVRFR+ V+ GD LVM + L+ + Q+RFG  KM+ +A V G++  EGE + +
Sbjct:   29 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQLPGLEGGL--FVFAGIDKVRFRRQVVPGDQLVMTVELLWIKQRRFG--KMQARAEVDGQLAAEGELMFS 168          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_PROMA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus GN=fabZ PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.133e-37
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = -2
Query:  196 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-RFGIAKMEGKAYVGGEVVCEGEFLMA 624
            P V+   +I  +LPHR+PF LVDRV+EY PG SA  IKNVTIN+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD L++   L+ +++ RFG  K++G+A V G +VC GE + +
Sbjct:    8 PVVLTNEEIMGLLPHRYPFALVDRVVEYEPGKSATGIKNVTINEPHFQGHFPGRPLMPGVLIVEAMAQVGGLIVKQIPDL--PKGLFVFAGIDSVRFRRPVVPGDQLLINCELISIKRQRFG--KVKGEAKVDGNLVCSGELMFS 148          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: LPXZ_CHLTE (Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidum GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.217e-36
Identity = 74/142 (52.11%), Postives = 101/142 (71.13%), Query Frame = -2
Query:  193 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 618
            + DIN I++ILPHR+PFLL+D+++E+      V+IKNVT+N+ FF GHFP  PIMPGVL++EAMAQ GG++ML  +        FF GIDK RFRKPV+ GDTLV+   +  +++   + + + KAYV GE+VCE   LMAT
Sbjct:  323 IFDINAIQNILPHRYPFLLIDKIVEFKLDEKIVSIKNVTMNEPFFQGHFPGNPIMPGVLIIEAMAQTGGIMMLNGKENIKESVVFFMGIDKARFRKPVLPGDTLVIEAVMTNMRRT--VCQFDAKAYVRGELVCEAS-LMAT 461          
BLAST of CF832673 vs. ExPASy Swiss-Prot
Match: FABZ_SYNSC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9605) GN=fabZ PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.217e-36
Identity = 81/143 (56.64%), Postives = 108/143 (75.52%), Query Frame = -2
Query:  196 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-QKRFGIAKMEGKAYVGGEVVCEGEFLMA 618
            V+   QI  +LPHR+PF LVDRVI ++PGVSA AIKNVT+N+  F GHFP+RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD LV+R  L+ L +KRFG  K++ +A V G++ C GE + +
Sbjct:   10 VLTSEQIAGLLPHRYPFALVDRVIAHDPGVSATAIKNVTMNEPQFQGHFPERPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLVIRCELLSLKRKRFG--KVKAEATVDGDLACSGELMFS 148          
The following BLAST results are available for this feature:
BLAST of CF832673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNY31.176e-3958.62(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEEB1.300e-3854.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MICAN6.452e-3853.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNJB8.426e-3856.25(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNJA1.101e-3757.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANAVT1.101e-3756.94(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANASP1.877e-3756.94(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMA7.133e-3754.48(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_CHLTE1.217e-3652.11Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidu... [more]
FABZ_SYNSC1.217e-3656.64(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02D24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832673 ID=CF832673; Name=CF832673; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTTTTTTGGCCATATCACCAAGAAAATTTACTATGTCCTC
AGTAATCGGGTTGATTTTGCATGAAATGAAGAGCGACTAAAAGCGTACAT
CGGGTTGCTGAAAATTCAACGAGCAGAATCAAGGAAAATCTGACAGTGAC
AAACTGAGATACCACCACATAGACACAACATTATTAACTACCGGTAGCCA
TCAAAAACTCACCCTCGCAGACCACTTCACCTCCCACATAAGCTTTCCCT
TCCATCTTTGCTATTCCGAAGCGTTTCTGTAGCTTGACAAGTGTCATTCT
CATGACCAAAGTGTCACCTGCAATCACTGGTTTCCTGAATCTTACTTTAT
CAATTCCAGCAAAGAAGAAATTTTCACGAGAGCCTCCCACTTCTGGTTGC
AGCATAACCAAGCCACCAACCTGTGCCATTGCCTCAACCATGAGAACACC
GGGCATAATTGGCCTATCAGGAAAATGGCCAGGAAAGAAGTTATCATTAA
TAGTAACATTCTTAATAGCAACAGCTGAAACTCCTGGATTGTATTCAATA
ACTCTATCCACCAAAAGAAATGGGAACCTGTGTGGCAAAATGTCACGAAT
CTGGTTAATGTCCATCACTGTAGGAAATGCCTGGTACCGAAGTTCGATGG
GTTTATCTTCGATGGGATCTTTGGGTTCAGCGTCCAAAGAACAAAATGTG
GTGAAACGAGCATGTCGTTGGTGCTGCTGTTGTTGATGATTCTTCTTCTT
GTCAAATTGGATGGAGAGAGTGTTGGGTTTTGGAATAGAGGAGGCATTTG
GGTTTGGTCGATGAAAATTGAAAGATAAAAGTGAATTGGCAAAA
back to top