CF832715

Overview
NameCF832715
Unique NameCF832715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.165e-27
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAV--SAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAW-ENGEDEVVLIATN 736
            LT+ RFD+ G KQ+DVPI S+  P+F+HDFAITKR AIF+E QL +  +  +++L  G P   D  K PR+G+I KYA  ++EMKWF VPGFN +H  NAW E+  + VVLIA N
Sbjct:  309 LTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPN 423          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.052e-26
Identity = 57/114 (50.00%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  401 LTFSRFDANGVKQ-KDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAW-ENGEDEVVLIATN 736
            +T+SR+D +G K   DVPI S   P+F+HDFAIT+ +A+F + Q+ +  A ++ G+ M    D EKVPR+G++ +YATSD+EM+WF+VPGFN +HV NAW E G + VV++A N
Sbjct:   84 VTYSRYDCDGKKSGPDVPIFSFKEPSFVHDFAITEHYAVFPDIQIVMKPAEIVRGRRMIGP-DLEKVPRLGLLPRYATSDSEMRWFDVPGFNMVHVVNAWEEEGGEVVVIVAPN 196          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGE-DEVVLIAT 733
            L + RF  +G K  DV I  +++PT +HDFAIT+ F +  + Q+      ++ G G P V+D  KV R GI+ KYA   + +KW + P     H++NAWE  E DEVV+I +
Sbjct:  320 LKYFRFSPDGTKSPDVEI-QLDQPTMMHDFAITENFVVVPDQQVVFKLPEMIRG-GSPVVYDKNKVARFGILDKYAEDSSNIKWIDAPDCFCFHLWNAWEEPETDEVVVIGS 429          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLI 727
            L + RF  +GVK  ++ I  +  PT IHDFAIT+ F +  + Q+      ++ GK  P VFD EKV R+GI+ K AT  +++ W N P     H++NAWE+ E E +++
Sbjct:  303 LKYFRFSPDGVKSPELEI-PLETPTMIHDFAITENFVVIPDQQVVFKLGEMISGKS-PVVFDGEKVSRLGIMPKDATEASQIIWVNSPETFCFHLWNAWESPETEEIVV 409          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGE-DEVVLIAT 733
            L + RF A+GVK  DV I  +  PT +HDFAIT+ F +  + Q+      ++ G G P V+D  K  R GI+ K A     M+W + P     H++NAWE  E DE+V+I +
Sbjct:  339 LKYFRFSADGVKSPDVEI-PLKEPTMMHDFAITENFVVVPDQQVVFKLTEMITG-GSPVVYDKNKTSRFGILDKNAKDANAMRWIDAPECFCFHLWNAWEEPETDEIVVIGS 448          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGE-DEVVLIAT 733
            L + RF ++G K  DV I  +++PT IHDFAIT+ F +  + Q+      ++ G G P V+D +K  R GI+ K A   + ++W  VP     H++N+WE  E DEVV+I +
Sbjct:  380 LKYFRFTSDGEKSPDVEI-PLDQPTMIHDFAITENFVVIPDQQVVFRLPEMIRG-GSPVVYDEKKKSRFGILNKNAKDASSIQWIEVPDCFCFHLWNSWEEPETDEVVVIGS 489          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGE-DEVVLIAT 733
            L + +F   G K  DV I  +  PT +HDFAIT+ F +  + Q+    +++ LGK  P  +D EK+ R GI+ + A   +EM W   P     H++NAWE+ E DEVV+I +
Sbjct:  310 LKYFKFSPEGEKSPDVEI-PLASPTMMHDFAITENFVVIPDQQVVFKLSDMFLGKS-PVKYDGEKISRFGILPRNAKDASEMVWVESPETFCFHLWNAWESPETDEVVVIGS 419          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLI 727
            LT+     +G+    VPI +I+ P  +HDFAIT+ +AIF +  +      ++  K M   FDP K  R G++ +YA  +  ++WF +P     H  NAWE  EDEVVLI
Sbjct:  244 LTYRVISKDGIMHDPVPI-TISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEE-EDEVVLI 350          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWEN-GEDEVVLIAT 733
            L +  F  +G K  DV I  + +PT IHDFAIT+   +  + Q+      ++ G G P V D EK  R G++ K+A   +EM W +VP     H++NAWE+    EVV+I +
Sbjct:  321 LKYFYFRPDGTKSDDVEI-PLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRG-GSPVVLDKEKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGS 430          
BLAST of CF832715 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  401 LTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLI 727
            +T+     +G  Q  VPI +I+ P  +HDFAIT+ ++IF +  L      ++  K +   FD  K  R G++ +YA  D  ++WF +P     H  NAWE  EDE+VLI
Sbjct:  244 VTYRVISKDGFMQDPVPI-TISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFHNANAWEE-EDEIVLI 350          
The following BLAST results are available for this feature:
BLAST of CF832715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD4_ARATH3.165e-2753.91Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA2.052e-2650.00Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED3_ARATH1.128e-1640.189-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED2_ARATH7.314e-1639.459-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED1_PHAVU2.779e-1539.299-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED9_ARATH1.379e-1438.399-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED5_ARATH3.073e-1438.39Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
CCD1_ARATH8.941e-1438.53Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
NCED1_MAIZE1.168e-1337.509-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
CCD1_PEA5.795e-1336.70Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02E22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832715 ID=CF832715; Name=CF832715; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTCCTTTTGAACACACAATAACTTTTATTGATTTATTTCCTT
TCCTCAGGAAAATACTTAGCTCAAAAGTAAACAAAAAGATTGCTTGTACG
TCTCAAGAAATCTTATAAGTTGAACTAAACCATACTAAAACATTGTCATG
ATTGATAGGTAATAGTATACCTATCATTTATTTAATTAAACAAAACAGAA
AAAAAAAAAAGCAGTGCTGCACTTAACCCATGTAGTCGGGGTTTCTTCCA
TATTGGGGGACATTAAGAAAATCAAGATTGTCGTTCATGACATCATCATC
AGCAATACTGCCAAACGGAGGAAGCAGAAGACCCTCTGACCAGTTATTAC
CTGCGCAGGTGGTTTCCATGTTCTTCAAATCAGAAAGATCTCTGCTTACG
CTTACATTCTCCCGTTTTGATGCAAATGGTGTTAAGCAAAAGGATGTGCC
TATATTGTCCATAAATCGACCAACTTTCATCCATGATTTTGCTATAACCA
AGAGGTTCGCTATTTTCTCAGAGACACAATTAGCCGTTTCAGCAGCAAAT
GTGATGTTGGGAAAAGGCATGCCGACGGTTTTTGATCCGGAAAAAGTCCC
AAGAATTGGGATCATATTGAAGTATGCAACAAGTGATGCCGAGATGAAGT
GGTTTAATGTTCCGGGGTTTAATGCAATGCATGTCTTCAATGCTTGGGAA
AATGGAGAGGATGAGGTTGTTCTTATTGCGACAAATGCTAC
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