CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:7..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.213e-43
Identity = 90/155 (58.06%), Postives = 118/155 (76.13%), Query Frame = -2
Query:  123 MSTVRLPTSCLFQAAPRSK---KFFLVKS-PASLGSTRSVFKAFGLKCF--SFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 569
            M+TVR+ ++ + +A  RS+   K    KS   S+GST+ V ++FGLKC   S  A+  AVYKVKL+GP+G+E+EF+  DD YI+D AE+AG++LPYSCR GAC TCAGQ+VSG+VDQSDGSFL+D  +EKG+VLTCVAYP SDC I+  KE EL+
Sbjct:    1 MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.420e-43
Identity = 93/152 (61.18%), Postives = 107/152 (70.39%), Query Frame = -2
Query:  123 MSTVRLPTSCLFQAAPRSKKFF--LVKSPASLGSTRSVFKAFGLKCFS-FKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 569
            MST    TSC      R+ +     VKSP+SL     V K   LK       SAMAVYKVKL+GP GEE+EFDAPDDAYI+D AE AG+ELPYSCR GAC TCAG++ SGSVDQSDGSFLDD Q E+G+VLTCV+YP SDC I+  KE +LY
Sbjct:    1 MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.115e-35
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -2
Query:  123 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 413
            AVYKVKLIGP GEENEF+  DD +I+D AE+AG++LPYSCR GAC TCAGQ+V G VDQS+GSFL+D   EKGFVLTCVAYP SDC I+  KE EL+
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.536e-35
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = -2
Query:  123 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 413
            AVYKVKLIGP+G+ENEFD PDD YI+D AE+AG++LPYSCR GAC TCAG++  G VDQSDGSFL+D   EKG+VLTCVAYP SD  I+  KE EL+
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = -2
Query:  123 GSTRSVFKAFGLKCFS-FKASAMAV-YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 479
            G  R   +A G +  S F ASA AV +KVKL+GP+G E+EF+APDD YI++ AE AG+ELP+SCR G+C TCAG+M +G VDQS+GSFLDD QM +G++LTC++YP +DC I+  KE +LY
Sbjct:   35 GHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCR GAC TCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I   +E ELY
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCR GAC TCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I   +E ELY
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCR GAC TCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I   +E ELY
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.276e-31
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = -2
Query:  123 VYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 410
            VYKV L+   G E   D PDD YI+D AED G++LPYSCR GAC TCAG++VSG+VDQSD SFLDD Q+EKG+VLTCVAYPTSD  I   KE +LY
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 73/127 (57.48%), Postives = 92/127 (72.44%), Query Frame = -2
Query:  126 PASLGSTRSVFKAF-GLKCFSFK----ASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 491
            P S+ +T++    F GLK  S K    A AMA YKVKL+ P+G + EF+ P D YI+D AE+ G++LPYSCR G+C +CAG++V G VDQSDGSFLDD+Q+E GFVLTCVAYPTSD  I   KE +L
Sbjct:   23 PMSVTTTKAFSNGFLGLKT-SLKRGDLAVAMASYKVKLVTPDGTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH7.213e-4358.06Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE9.420e-4361.18Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_RAPSA1.115e-3571.13Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_RAPSA5.536e-3570.10Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE7.993e-3457.85Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_THEVL9.771e-3263.27Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB9.771e-3263.27Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN9.771e-3263.27Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER1_NOSMU1.276e-3166.67Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_PEA2.177e-3157.48Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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