CF832853

Overview
NameCF832853
Unique NameCF832853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:51..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.577e-36
Identity = 76/174 (43.68%), Postives = 110/174 (63.22%), Query Frame = 3
Query:   87 VGFWIHETGQALDRLGCRLQGNYYFQKQLSRHPTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPSG*VWGGN 608
            +G  +  TG  L R GC++QG+Y + ++L+RH  L    D AP V + +F+AP+ASIIGDV +G+ SSIWY  VLRGDVNSI +G  T + D ++VH + +   G   PT IGD V +   +++H  T   E+F+G G+TL DG   +++G + AGSL+     I SG  WGG+
Sbjct:   10 LGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPNASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGP-KPTQIGDKVYIGPGSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGS 182          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: UMP7_ARATH (Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPSG*VWGGN 608
            P V  DA+VAP+  + G V V  GSS+W G VLRGD+N ITVG  +N+ +  +VH A S+  G    T I   VTV   ++L  CT E E  +G  + L++G   +   ++ AGS+V     IPSG +WGGN
Sbjct:   66 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGN 197          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: UMP8_ARATH (Uncharacterized protein At3g48680, mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.795e-22
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPSG*VWGGN 608
            P V  DA+VAP+  + G V V  GSS+W G VLRGD+N ITVG  +N+ +  +VH A S+  G    T I   VTV   ++L  CT E E  +G  + L++G   +   ++ AGS++     IPSG +WGGN
Sbjct:   70 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELWGGN 201          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: Y304_METJA (Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii GN=MJ0304 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  219 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIP 584
            + K+  +A  A I+GDV +G  SS+WY  V+RGDV+ I +G+ +NI D  +VH +K        PT IGD V++ H AV+HGC  ED   VGM AT+L+G     + ++ A +LV  +  IP
Sbjct:    2 ISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKG------YPTIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGAKIGENCIIGANALVTQNKEIP 117          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: YRDA_SHIFL (Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 54/136 (39.71%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  204 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVA-KSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPSG*VWGGN 608
            D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNI D S++HV  KS+      P TIG++VTV H  +LHGCT  +   VGMG+ LLDG   +   M+ AGSLV  +  + SG ++ G+
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGS 145          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: YRDA_ECOLI (Protein yrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 54/136 (39.71%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  204 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVA-KSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPSG*VWGGN 608
            D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNI D S++HV  KS+      P TIG++VTV H  +LHGCT  +   VGMG+ LLDG   +   M+ AGSLV  +  + SG ++ G+
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGS 145          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: Y3753_PSEAE (Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa GN=PA3753 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  228 DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPSG 590
            D+++APSA++IG V++  G+S+W+G VLRGD   I +G  +N+ D S++H           P T+G  VTV H A+LHGC+  D + VG+ A +L+G    ++ ++ A +L+     IP G
Sbjct:   15 DSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMG------YPLTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEIPDG 129          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: YTOA_BACSU (Uncharacterized transferase ytoA OS=Bacillus subtilis GN=ytoA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.292e-16
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 3
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPSG 590
            P +   AF+A +A+I GDV +G  SSIW+  V+RGDV    +G+  NI D S +H + +          I D+ T+ H   LH       A +GMG+ +LDG        + AGSLV     IP G
Sbjct:   10 PDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNK------TLLIEDDATIGHQVTLHSAVIRKNALIGMGSIILDGAEIGEGAFIGAGSLVPPGKIIPPG 129          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: PAAY_ECOLI (Phenylacetic acid degradation protein paaY OS=Escherichia coli (strain K12) GN=paaY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.940e-15
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVRHSTAIPS 587
            P V +++FV P+A +IGDV +G+G  +     LRGD   I V  G NI DN ++H            T +G++  + H A+LHGC     A VGM A ++DG     + +V A + V+    +P+
Sbjct:   11 PVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCVMHGFPEQ------DTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAFVKAKAEMPA 129          
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO5E (Carnitine operon protein caiE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122          
The following BLAST results are available for this feature:
BLAST of CF832853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
Y2881_DICDI7.577e-3643.68Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
UMP7_ARATH1.255e-2242.42Uncharacterized protein At5g63510, mitochondrial O... [more]
UMP8_ARATH2.795e-2241.67Uncharacterized protein At3g48680, mitochondrial O... [more]
Y304_METJA2.366e-2141.80Uncharacterized protein MJ0304 OS=Methanocaldococc... [more]
YRDA_SHIFL8.992e-2139.71Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=... [more]
YRDA_ECOLI8.992e-2139.71Protein yrdA OS=Escherichia coli (strain K12) GN=y... [more]
Y3753_PSEAE5.828e-2038.02Uncharacterized protein PA3753 OS=Pseudomonas aeru... [more]
YTOA_BACSU2.292e-1636.51Uncharacterized transferase ytoA OS=Bacillus subti... [more]
PAAY_ECOLI1.940e-1534.40Phenylacetic acid degradation protein paaY OS=Esch... [more]
CAIE_ECO5E3.659e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832853 ID=CF832853; Name=CF832853; organism=Citrus sinensis; type=EST; length=609bp
AACTTGAGCTCCAAAAGTATCGACGCTCATTCACCGATCCCCAAAGCCAA
CAAGAGATGGGAACCCTAGGGCGAGCACTTTACACCGTTGGCTTCTGGAT
TCACGAAACCGGCCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCA
ACTACTACTTCCAAAAGCAACTGTCTAGGCATCCAACTCTCATGAACATA
TTTGATAAAGCTCCCGCAGTCGACAAAGATGCATTTGTTGCTCCAAGTGC
CTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATG
GATGTGTTTTGAGAGGGGATGTGAATAGCATCACTGTTGGATCAGGAACA
AATATACATGACAACTCCCTTGTGCATGTTGCCAAGTCTAATCTAAGAGG
GAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTACGCCATATTG
CTGTTTTACATGGCTGTACTGATGAGGACGAGGCCTTTGTTGGCATGGGA
GCAACACTACTTGATGGTGTTGCTGCTGATAGACATGGCATGGTTGCTGC
TGGATCTCTTGTGAGGCACAGTACCGCCATCCCTTCTGGATAGGTATGGG
GAGGCAATC
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