CF832858

Overview
NameCF832858
Unique NameCF832858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1334..2043. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832858 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 80/138 (57.97%), Postives = 92/138 (66.67%), Query Frame = -2
Query:  308 GPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXGMVNNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDA----VVDSSPNEDEQWSY 709
            GPSVVRVLQSDGPH FAVTRA+ G SC DVLRVMQHEP+LMFETLKHRA E+CGQ                 +VN   LA+SLAQ F +MPYLV  ++C L A+ N  G YYC+G+D+ A    V  S   EDE WSY
Sbjct:  603 GPSVVRVLQSDGPHGFAVTRAVAGSSCADVLRVMQHEPQLMFETLKHRALEFCGQH------------DDDSVVNAGVLANSLAQSFDNMPYLVSSTTCCLNALTNNNGFYYCSGDDFSADTVSVATSVAGEDENWSY 728          
BLAST of CF832858 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 67/134 (50.00%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  308 GPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXGMVNNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSY 709
            GPSVVRV QSDGPHSFAVTRA+PGPSCGDVLRVMQH+PELMFETLKHRA+EY   ++                   + LA+ LA+ F  MPYL+  SS                 +D  A V ++ +  EQWSY
Sbjct:  590 GPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDNAA-----------------ALLAAGLARTFDRMPYLLSLSSFV--------------ADDVAAAVPAAQDLGEQWSY 692          
BLAST of CF832858 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 71/145 (48.97%), Postives = 84/145 (57.93%), Query Frame = -2
Query:  299 GPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXGMVNNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGL------YYCNGED--YDAVVDSSPNEDEQWSYCYA 709
            GPSVVRV QSDGP S+AVTRA+PGPS  DVLRVM HEPELMF+TLKHRAEE C  ++                     LA  LAQ F+S PYLV   +      +NG GL      Y+   +D    A VD++  E+EQWSY  A
Sbjct:  599 GPSVVRVQQSDGPQSYAVTRAVPGPSSSDVLRVMHHEPELMFQTLKHRAEE-CDNDY-----------------TAGPLADMLAQSFNSTPYLVPGHATGSCGFSNGSGLVNGCREYFYGVDDGCNAAAVDAAAGEEEQWSYVCA 725          
BLAST of CF832858 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 68/135 (50.37%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  308 GPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXGMVNNSALASSLAQYFHSMPYLVVPSSC-SLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSY 709
            GPSVVRVLQSDGPH FAVTRA+ G S  DVLR MQHEPELMF+TLKHRAEE     +                 +   +AS LA+ F++MPYL + +S  +LTA  N  G+YYC   D  A       +DE WSY
Sbjct:  578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHRAEEPRNNNNKACGDKGN---------DKLVVASCLAKSFNNMPYLSMETSTNALTAAVNNLGVYYC---DEAAAGGGGKGKDENWSY 700          
BLAST of CF832858 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 65/124 (52.42%), Postives = 76/124 (61.29%), Query Frame = -2
Query:  347 GPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXGMVNNSALASSLAQYFHSMPYLVVPS---SCSLTAINNGGGLYYCNGEDYDAV 709
            GPSVVRV QSDGPHSFAVTRA+PG S  DVLR MQHEPELMF+TLKHRAEE                       NN  +A+SL + FH+MPYL       S SL+A  +  G YYC+ + YD +
Sbjct:  590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEEM--MHTKGGSEGENEEEEEDDEFNN--VAASLDRSFHNMPYLATEQASPSNSLSAAISNLGFYYCDEDVYDYI 709          
BLAST of CF832858 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 66/138 (47.83%), Postives = 81/138 (58.70%), Query Frame = -2
Query:  308 GPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXGMVNNSALASSLAQYFHSMPYLVVPSSCS--LTAINNGGGLYYCNGEDYDAVVDSSP--NEDEQWSY 709
            GPSVVRVLQ DGPH FAVTRAM G S  DVLR MQHEPELMF+TLKHRAEE                       N+  +AS LA+ F++MPYL V +S +    AINN   +YY +    +A V +     ++ +WSY
Sbjct:  579 GPSVVRVLQKDGPHGFAVTRAMMGQSSADVLRAMQHEPELMFQTLKHRAEE-----------LSLVHKPGGDKGNDKLVASCLARSFNNMPYLSVGTSTNALTAAINN--LVYYSD----EAAVGNGGGCGKNGKWSY 699          
BLAST of CF832858 vs. ExPASy Swiss-Prot
Match: SPE1_ORYSJ (Arginine decarboxylase OS=Oryza sativa subsp. japonica GN=ADC1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 52/134 (38.81%), Postives = 69/134 (51.49%), Query Frame = -2
Query:  308 GPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXGMVNNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSY 709
            GPSVVRV QSDGPH FAVTRA  GPSC DVLR MQHEPE+MFE LK R +                           A A++LA+ F +MPYL      +  A     G+   + +   +   ++  +D++W +
Sbjct:  592 GPSVVRVSQSDGPHCFAVTRAAAGPSCADVLRSMQHEPEVMFEVLKQRTD--------------------------GATAAALARAFGAMPYLSFDPEAAAMASGESSGM---SSDSEGSAAGAAEEDDDEWEF 696          
The following BLAST results are available for this feature:
BLAST of CF832858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SPE1_PEA3.157e-3757.97Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE1_SOYBN9.528e-2650.00Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE1_DIACA9.528e-2648.97Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_ARATH4.729e-2550.37Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE2_ARATH8.918e-2452.42Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_BRAJU9.228e-2147.83Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_ORYSJ2.513e-1838.81Arginine decarboxylase OS=Oryza sativa subsp. japo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832858 ID=CF832858; Name=CF832858; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTGAGTTAATCTAAAAGCTCTGATTGAAGCCCTTTAAT
GTTGACATAAAAAGAGGCCATGAGATCCCGAATTTACAAAAGGGCGGATT
CAGTACCCATCACTCCTCTTCTTCACTAAAATTGCAAAAGACAACGTTCA
ACTGCTTCCATCTTTTGCAATGAAAATCTAAAAATTAAAATAGACAATGA
AATTAAAATTACGGAATAAAAACTTGCAACAAGACAAGCTCAAGGATTAC
ATGAAGCATTTCGATAGGGTGACAGGTGATACTAAGAATACACATCTAAG
CATAGCAGTATGACCACTGCTCATCCTCATTTGGAGAAGAATCAACAACA
GCATCGTAATCCTCCCCGTTGCAATAGTATAACCCACCACCATTATTGAT
AGCAGTCAAAGAACAAGAGGATGGCACCACAAGATATGGCATGCTGTGAA
AGTACTGAGCAAGGCTGCTAGCTAAAGCAGAATTATTAACCATGCCGTGA
TCGTAATCATCAGTATCACCATCCCCACCATTACTACCATGCTCCTGTCC
ACAATATTCCTCAGCACGGTGTTTGAGGGTCTCAAACATGAGCTCGGGCT
CGTGCTGCATCACCCGGAGGACATCCCCACAAGACGGCCCAGGCATGGCC
CGAGTCACAGCAAAGCTGTGCGGACCATCACTCTGCAAGACGCGTACCAC
GCTTGGACCA
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