CF832927
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 3.521e-57 Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = -2 Query: 279 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 707 MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ KD +VVLAT KTKKQNKP ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 6.005e-57 Identity = 107/143 (74.83%), Postives = 124/143 (86.71%), Query Frame = -2 Query: 279 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 707 MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ GKD VVL T KTK+QNKP ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.700e-15 Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = -2 Query: 306 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSKS 686 L W I++ NN FLVK + N FSKEPNN+ NLNS++++GL +K V + P K +VV K K NKPA K+ +R++F A+ + +V N+YR DL KA L R SA+ RS + K+ Sbjct: 5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 2.161e-14 Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = -2 Query: 273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++ + K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKRTRPTK 135
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14 Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = -2 Query: 273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++ + K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 3.686e-14 Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = -2 Query: 273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++ + K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKPSRPTK 135
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4) HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13 Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -2 Query: 273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++ VV+ + Q KPA+ ++ + K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.641e-12 Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = -2 Query: 306 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKS 701 +V LIW++++ NN FLVK +FG ++F++EP N+ N+ + SGL N K V +Q V++ K KPA L K + R K++ ++ YR DL K ++AR SA+ S + K+ Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12 Identity = 52/151 (34.44%), Postives = 77/151 (50.99%), Query Frame = -2 Query: 267 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATKVP 707 MAT L W I++ NN FL+K + + FS EPNNL +++S+++SG+ ++KT+ + P K K +PA K+ +R +F R K + N + + YR DL +AAL R SAV RS K + KK K P Sbjct: 1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11 Identity = 47/136 (34.56%), Postives = 67/136 (49.26%), Query Frame = -2 Query: 282 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQ 686 L+W I+KKNN FL G + S EP NL N NS K+SGLA R T+ + GK VV+++ KK PA + R V +A Y P+L+ AAL RL V +L+ +K ++ ++ Sbjct: 5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131 The following BLAST results are available for this feature:
BLAST of CF832927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832927 ID=CF832927; Name=CF832927; organism=Citrus sinensis; type=EST; length=825bpback to top |