CF832927

Overview
NameCF832927
Unique NameCF832927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.521e-57
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = -2
Query:  279 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 707
            MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ   KD +VVLAT KTKKQNKP   ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.005e-57
Identity = 107/143 (74.83%), Postives = 124/143 (86.71%), Query Frame = -2
Query:  279 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 707
            MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.700e-15
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  306 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSKS 686
            L W I++ NN FLVK   + N    FSKEPNN+ NLNS++++GL  +K V +   P  K  +VV    K K  NKPA    K+ +R++F   A+  + +V      N+YR DL KA L R SA+ RS +  K+
Sbjct:    5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.161e-14
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++ + K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKRTRPTK 135          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++ + K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.686e-14
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++ + K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKPSRPTK 135          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -2
Query:  273 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 686
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++       VV+   +   Q KPA+   ++ + K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.641e-12
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  306 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKS 701
            +V   LIW++++ NN FLVK  +FG     ++F++EP N+   N+ + SGL N K V +Q       V++     K   KPA L  K  +     R   K++  ++    YR DL K ++AR SA+  S +  K+
Sbjct:    2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 52/151 (34.44%), Postives = 77/151 (50.99%), Query Frame = -2
Query:  267 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATKVP 707
            MAT    L W I++ NN FL+K   + +    FS EPNNL +++S+++SG+ ++KT+ + P            K K   +PA    K+ +R +F     R  K + N +  + YR DL +AAL R SAV RS K +    KK      K P
Sbjct:    1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143          
BLAST of CF832927 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 47/136 (34.56%), Postives = 67/136 (49.26%), Query Frame = -2
Query:  282 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQ 686
            L+W I+KKNN FL    G     +  S EP NL N NS K+SGLA R T+ +    GK   VV+++   KK   PA     +       R     V  +A   Y P+L+ AAL RL  V  +L+ +K    ++ ++
Sbjct:    5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131          
The following BLAST results are available for this feature:
BLAST of CF832927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL281_ARATH3.521e-5775.5260S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL282_ARATH6.005e-5774.8360S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL28_SPOFR9.700e-1540.6060S ribosomal protein L28 OS=Spodoptera frugiperda... [more]
RL28_HUMAN2.161e-1434.0660S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_MOUSE2.822e-1434.0660S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_BOVIN3.686e-1434.0660S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
RL28_RAT6.951e-1333.3360S ribosomal protein L28 OS=Rattus norvegicus GN=... [more]
RL28E_SCHPO2.641e-1232.59Probable 60S ribosomal protein L28e OS=Schizosacch... [more]
RL28_DROME3.450e-1234.4460S ribosomal protein L28 OS=Drosophila melanogast... [more]
RL28_DICDI8.497e-1134.5660S ribosomal protein L28 OS=Dictyostelium discoid... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02K23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832927 ID=CF832927; Name=CF832927; organism=Citrus sinensis; type=EST; length=825bp
TTTTTTTTTTTTTTTTTATTGCGCTTAAAAGTAGCACTCCTCTCATGATA
CAAAATAACACGCCAATTCAACATAAAAACAAAATCAAGTTAAAATCTAA
ATTTTGACCCTTTTCCCAGTGGGGTGGAACGGGCTAATATCTCCAGTACA
TCAAAAATTAAACATAAATGAAAACTGTCTTCTTGATACTTATAAGAACT
AAAATAAAACCATTCCAAGAACAAAGCATAACATCACTCGATTCCTCCTA
AAGTTCACTTCCTAACGGGAACCTTCGTAGCCTGCCTGTTTCTCTTTTTG
ACACCAGATTTTGAGACCTTTAGGCTCCTGTTAACAGCACTAAGCCTTGC
AAGGGCTGCCTTCTTCAAGTCTGGCCTGTAGTAGTTATCAGCAACCTGAT
TGACAACAGCCTTAGCCATTCTTGGGAACTCCTTCCTCATGGGGGATTTG
TGAAGCAAGCTGGCAGGCTTGTTCTGCTTCTTGGTCTTTGCAGTGGCCAA
CACCACAGACAGGTCCTTGCCTCCAGGCTGAATGGTCACAGTCTTCCGAT
TCGCCAAACCGGAGTGTTTGAAGGAGTTAAGGTTGTAGAGGTTGTTGGGT
TCCTTGCTGAACTCGACGCTGGCGTTGCCTCTGCCGAATTGTTTAACCAA
GAAGCAGTTGTTCTTCTTCACGATCTCCCAAATCAACTGTCCTGGAACCG
TCGCCATTTCTTTCTGCCTTTTTTTCACTCCGACTCACTGCCAAACACAG
CCTAAACAAATCAGTGCTGCTATATAGAAAATTGATGATGTATGAAATCA
AACCTTACAGCAGTGGGGGGGAGTG
back to top