CF832985

Overview
NameCF832985
Unique NameCF832985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13783 contig Csv1_Contig13783:109..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832985 vs. ExPASy Swiss-Prot
Match: Y3272_ARATH (Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 4.690e-90
Identity = 151/204 (74.02%), Postives = 176/204 (86.27%), Query Frame = -2 
Query:  147 RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWFYFTSGQRDKGPDDPAPRKVHGDMWRTK 758
            RGRLHVMGGS ENR     DHWS+AVKDGK L+ EWR E+PIPRGGPHRACVV +D+LLVIGGQEGDFMAKP SPIFKCSRR E+   +VYM+D+EMKWK+LP MPK +SHIE AW++VNNSIVIVGGTT+ HP TK++VLVGEIF+F L+TL W VIG+LPYRVKT +AG+WNG+ YFTSGQRD+GPD+P P KV G+MWRTK
Sbjct:  221 RGRLHVMGGSKENRNAVAFDHWSIAVKDGKALD-EWREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREIFNGEVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWNGYLYFTSGQRDRGPDNPQPGKVIGEMWRTK 423
The following BLAST results are available for this feature:
BLAST of CF832985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3272_ARATH4.690e-9074.02Kelch repeat-containing protein At3g27220 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02M11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832985 ID=CF832985; Name=CF832985; organism=Citrus sinensis; type=EST; length=759bp
TTTTTATTGATGATTAGGCCACTGAAAATTACAAATAAAATTACGGCAAG
ACAAACAATTGACTTGATTACAAGTGGTTAATAAATTTAGTAGGAAAGAT
CCCAACAAAATAATCAACAAGAATTCCATCATGAGTTTAATAACAATTTG
GTTCTCCACATATCTCCATGTACCTTCCTTGGTGCCGGATCGTCTGGTCC
CTTATCTCGCTGTCCTGATGTGAAGTAGAACCATCCATTCCAGTAACCAG
CTAGAGTTGTTTTCACACGGTAAGGGAGTTTTCCAATCACATGCCACTTC
AGTGTGTTCAAGTTAAACTGAAATATTTCTCCAACCAGAACCATCTTTTT
GGTTGTAGGATGCTTCTCTGTTGTGCCTCCAACAATGACGATAGAATTGT
TGACAAGCACCCAAGCAAATTCAATATGAGAATCTGGTTTTGGCATAGAA
GGCAAGACTTTCCACTTCATCTCGTCATCCAGCATGTAGACATCATCATA
TACAACCTCATTCCTACGAGAGCACTTGAAAATAGGCGATCCTGGTTTGG
CCATAAAATCACCTTCTTGACCACCAATAACAAGTAGACGATCATCAACC
ACAACACAAGCCCTATGAGGTCCTCCGCGAGGAATCGGAATTTCAGTTCT
CCACTCCTTTTCTAATGGTTTTCCATCCTTGACTGCAAGGCTCCAATGAT
CTACTTCAGGTGTGTACCGATTCTCCCCACTACCACCCATCACATGTAGT
CTACCTCTC
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