CF832994
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_ARATH (DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1) HSP 1 Score: 520.005 bits (1338), Expect = 6.777e-147 Identity = 253/288 (87.85%), Postives = 275/288 (95.49%), Query Frame = 3 Query: 6 QDRWHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQ 869 +++WHGAEIQVVI+GNWTTYRSKILHYMRQMAVITPYAQFLF+F+SE EKNVTI+F+RRTDVMPP+P+ETKHHPSSVDLLLIK LI +TSK TLLQFLQ+EFVNI K+LA RLIGEMGP+F P MAVKS+TSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS+GG+DVKQG+NIFRFANRIPLLFEQG DVVTRTA+KRINW+SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDD EIA+AVKSAIQ Sbjct: 248 KEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRRTDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARLIGEMGPDFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGRDVKQGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQ 535
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIY (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=top6B PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 104/287 (36.24%), Postives = 170/287 (59.23%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + ++I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIN (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=top6B PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 104/287 (36.24%), Postives = 170/287 (59.23%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + ++I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIM (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=top6B PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 104/287 (36.24%), Postives = 170/287 (59.23%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + ++I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIL (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=top6B PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 104/287 (36.24%), Postives = 170/287 (59.23%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + ++I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIK (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=top6B PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 104/287 (36.24%), Postives = 170/287 (59.23%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + ++I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIA (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.16.27) GN=top6B PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 104/287 (36.24%), Postives = 170/287 (59.23%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + ++I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULSO (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus solfataricus GN=top6B PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.094e-43 Identity = 102/287 (35.54%), Postives = 170/287 (59.23%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK +I + T+ +FL EF +IG + A++++ +G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAG++ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + ++I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKIMINNLKRDYTIKEFLMSEFQSIGDTTADKILELVG--LRPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFTASITRKPKAYQGHPFIVEAGIAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_SULSH (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus shibatae GN=top6B PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.094e-43 Identity = 104/287 (36.24%), Postives = 169/287 (58.89%), Query Frame = 3 Query: 15 WHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 866 +HG + + I G+W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GKE I + + I +K+A+ Sbjct: 167 FHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKD----PEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKDEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVENIEKEIKNAL 444
BLAST of CF832994 vs. ExPASy Swiss-Prot
Match: TOP6B_AERPE (Type 2 DNA topoisomerase 6 subunit B OS=Aeropyrum pernix GN=top6B PE=3 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 7.722e-42 Identity = 95/292 (32.53%), Postives = 158/292 (54.11%), Query Frame = 3 Query: 3 RQDRWHGAEIQVVIQGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG--PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQ 869 ++ WHG + + ++G+W+ +SKIL Y+++ AVI PYA+ + + F R T +P P E+K HP VD+ +K ++ T TL +FL EF +IG A+ + + G P+ P+ +K + + R+ + F P LSP G + +G+ + +P+ V S S + + GHPFIVE G++ GG + + + R+AN+IPLL+E+ D V+ + INW Y ++ + V V I STK+P+KG GKE + D EI + +++A+Q Sbjct: 189 KRGSWHGTRVTLSLEGDWSRAKSKILEYIKRTAVIAPYAEIILE-----TPDGEIYYFPRSTRKLPKPPRESKPHPHGVDIEQLKSMLRSTRASTLREFLVKEFQSIGDKTAQDFLEKYGLDPDLKPRELLKKGRDKLLRRLADALMEYPFRAPKSDYLSPIGSDIIEIGLRRMFNPEWVGAVSRSPKAYRGHPFIVEVGIAYGGGIEARSEPLLLRYANKIPLLYEERED-VSYKVVSSINWRQYNVDFPAPLV-VLVHIASTKVPYKGVGKESV-SDVPEIEAEIRNAVQ 472 The following BLAST results are available for this feature:
BLAST of CF832994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832994 ID=CF832994; Name=CF832994; organism=Citrus sinensis; type=EST; length=870bpback to top |