CF833005

Overview
NameCF833005
Unique NameCF833005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig32 contig Csv1_Contig32:324..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.819e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YFF+ L+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  610 YFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.819e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YFF+ L+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  610 YFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.819e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YFF+ L+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  609 YFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.819e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YFF+ L+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  610 YFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YF   L+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  590 YFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YF   L+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  589 YFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YF   L+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  590 YFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YF   L+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  589 YFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 YFFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            YF   L+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  589 YFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833005 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    4 FFTILEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 162
            FF  L ITK +S +L F Y  I+S AF  LTGTIGFY+C++ VRKIYSS+ I+
Sbjct:  589 FFRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641          
The following BLAST results are available for this feature:
BLAST of CF833005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TM9S2_RAT3.819e-1464.81Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB3.819e-1464.81Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE3.819e-1464.81Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN3.819e-1464.81Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT3.952e-1153.70Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB3.952e-1153.70Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE3.952e-1153.70Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN3.952e-1153.70Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN3.952e-1153.70Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
PHG1A_DICDI8.805e-1158.49Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02M22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833005 ID=CF833005; Name=CF833005; organism=Citrus sinensis; type=EST; length=491bp
TACTTCTTCACCATTTTGGAAATTACAAAGCTGGTTTCGGGCATCCTTTA
CTTTGGGTACATGGTAATTGTTTCGTATGCTTTCTTTGTCTTGACGGGGA
CAATTGGCTTTTACGCATGCTTCTGGTTTGTACGCAAGATCTATTCCTCC
GTGAAAATTGACTAATCTGGATATTTTGAAGATCCTTGGACAAGTAGTAG
ATGAAGCAAAGAGTCTGAACCATATTGACTGTATCTGCAGATTTACACCA
TGGGAAGTTTATTTCCCATTTTCCTGAAAACCGTTTTTTATTTTGAAATA
GAGTAGGGATGAGCAATGTGCATGTGTTCTTATGTTTACACTACAAAAAT
CAAACGTGTACTTCCATTAGTTTCTATGCAAGAAGTTTAGATTGTCTTCT
GCTTATGCTTATCTGATTTTCACCATTAAAATCATGAATTCTGAAGTATT
CTGTGTTATCGATTTTTTAATTAGTAAAAAAAAAAAAAAAA
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