CF833008

Overview
NameCF833008
Unique NameCF833008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13016 contig Csv1_Contig13016:505..1224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.333e-50
Identity = 96/161 (59.63%), Postives = 122/161 (75.78%), Query Frame = -1
Query:  241 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHG-ENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 720
            RGASKD+ NE+ERNL DA+ VARN++ NPKLVPGGGA E+ ++  L + S  IEG+++WP++A A A E IPRTLAQNCG +V+R M  L+ KH +  E  + GIDGN+G I DM+E  +WD  +VK QT KT+IEA CMLLRIDDIVSGIKK +  G+GQ
Sbjct:  379 RGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIKKDKRGGAGQ 539          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.067e-48
Identity = 94/159 (59.12%), Postives = 122/159 (76.73%), Query Frame = -1
Query:  244 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 720
            RGASKD+ NE+ERNL D ++VA+NI  NPKLVPGGGA E+ VS+ L++ SSSIEG+ + P+ A A A EAIP+TLAQNCGV+V+R +  L+ KH    N +IGI+GNSG I+DM E  +W+   VK Q +KTAIE+ACMLLRIDD+VSG+KK++    G
Sbjct:  380 RGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLHQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKHNQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLKKQKVAKGG 538          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.304e-46
Identity = 89/152 (58.55%), Postives = 115/152 (75.66%), Query Frame = -1
Query:  265 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 720
            RG SKD+ NEVERNLQDAM+VARN+  +PKL PGGGATE+ VS  L +K+ SIEG+ +WPY A A A E IPRTL QNCG N I+ +  L+ KH  G++++ GIDG +G + DM E  +W+   VK Q+ KTAIE+AC+LLR+DDIVSG++K
Sbjct:  375 RGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSF-GIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRK 525          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 91/173 (52.60%), Postives = 120/173 (69.36%), Query Frame = -1
Query:  205 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHV-HGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQTPLKPQIETEAD 720
            RGASK++  EVERNLQDAM V RN++ +P LVPGGGA+E++V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR + +L+ KH   G   W G+DG +G ++DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK      Q    P+   +A+
Sbjct:  376 RGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTW-GVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVSGHKKKGEDHGRQPAAAPEAPQQAE 547          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 87/161 (54.04%), Postives = 115/161 (71.43%), Query Frame = -1
Query:  238 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQT 720
            RGASK++ +EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR + +L+ KH        G++G +G + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK    + QT
Sbjct:  377 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQT 537          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 87/161 (54.04%), Postives = 115/161 (71.43%), Query Frame = -1
Query:  238 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQT 720
            RGASK++ +EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR + +L+ KH        G++G +G + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK    + QT
Sbjct:  377 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQT 537          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.640e-44
Identity = 89/168 (52.98%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  241 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 720
            RGASK++ +EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR + +L+ KH        G++G +G + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  377 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 177.948 bits (450), Expect = 4.640e-44
Identity = 89/168 (52.98%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  241 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 720
            RGASK++ +EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR + +L+ KH        G++G +G + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  377 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.640e-44
Identity = 89/168 (52.98%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  241 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 720
            RGASK++ +EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR + +L+ KH        G++G +G + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  377 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 88/168 (52.38%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  241 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 720
            RGASK++ +EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR + +L+ KH        G++G +G + D+KE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  377 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
The following BLAST results are available for this feature:
BLAST of CF833008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
TCPG_OXYGR4.333e-5059.63T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_TETPY1.067e-4859.12T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_SCHPO1.304e-4658.55T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_XENLA5.481e-4552.60T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_RAT3.552e-4454.04T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_MOUSE3.552e-4454.04T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_PONAB4.640e-4452.98T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_HUMAN4.640e-4452.98T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN4.640e-4452.98T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_MACFA1.350e-4352.38T-complex protein 1 subunit gamma OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833008 ID=CF833008; Name=CF833008; organism=Citrus sinensis; type=EST; length=720bp
AGTGTCCCCAATGAAATTATGAAATTGCAAAAGTACCATCCACCCTTTAA
TCAGATAAATAAAAAATATTAAAATACATAAGTTTCCTGGAAGAATAAAA
TGGACCGCCAACAGAACAAGAAGCCAGCATTTTTTCAAAAATTTAACTGC
ATAGTCAGTCAACAGTAAAGTTGTCTAGGCAGGGAGTATTTGCTCACTGT
CTGCATCTGCCTCCGTCTCAATCTGAGGCTTCAATGGAGTTTGGCCTGAC
CCAGGGGCCTGTTTCTTCTTAATGCCACTGACAATGTCATCAATCCTCAG
AAGCATGCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACAT
TATATGCATCCCAGATCTTCCTCTCTTTCATGTCAGAAATTGCACCACTG
TTTCCATCTATGCCGATCCATGCATTTTCACCATGAACGTGTTTTCCTTG
CAAGGCATTCATGGTCCTAATTACATTAACCCCACAATTCTGAGCCAAAG
TTCTTGGTATAGCCTCAAAAGCGATAGCAGCAGCTTCATAAGGCCACTTT
TCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAGATACTGT
TAATTCTGTAGCCCCTCCACCAGGTACTAGTTTAGGATTCTTGATTATGT
TTCTTGCCACAGACATTGCATCCTGCAAATTTCTTTCCACTTCATTCGAG
AGATCCTTACTAGCACCTCT
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