CF833018

Overview
NameCF833018
Unique NameCF833018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF833018 vs. ExPASy Swiss-Prot
Match: BSPB_POPDE (Bark storage protein B OS=Populus deltoides GN=BSP PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.333e-24
Identity = 46/123 (37.40%), Postives = 76/123 (61.79%), Query Frame = -1 
Query:  327 GRICLAKAEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQ-LQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSPVDEESAAIVMACLSNAVPSIVFRGVSDLGG 692
            G   L   E+   +++S  +  +E+FWLP+   W++ AT+ L+D++LR+C +D  CLP  PKV+ G + ST+D ++ N AY +FL   F+    D  SA++ +  LSN    +VF+GVS++ G
Sbjct:  156 GENLLGTVEYEKIKMFSPSEAPKEVFWLPITKSWYNAATEALKDMKLRKCYSDE-CLPGEPKVVFGSKSSTSDFYVRNKAYGDFLNDNFDAKTADTTSASVALTSLSNEKLFVVFQGVSNVAG 277

HSP 2 Score: 34.2686 bits (77), Expect = 8.333e-24
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = -3 
Query:  676 WKAFKSETGQLPELDFGAFNFPVRGKNLSG 765
            WK F+SE G+L    FG FN+P  G+NL G
Sbjct:  135 WKKFRSEKGKLV---FGDFNYPENGENLLG 161
[Close]
BLAST of CF833018 vs. ExPASy Swiss-Prot
Match: BSPA_POPDE (Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.411e-23
Identity = 46/123 (37.40%), Postives = 77/123 (62.60%), Query Frame = -1 
Query:  327 GRICLAKAEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQ-LQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSPVDEESAAIVMACLSNAVPSIVFRGVSDLGG 692
            G   L   E+   +++S  +  +E+FWLP+   W++ AT+ L+D++LR+C +D  CLP +PKV+ G + ST+D ++ N AY +FL   F+    D  SA++ +  LSN    +VF+GVS++ G
Sbjct:  156 GENLLGTVEYEKIKMFSPSEAPKEVFWLPITKSWYNAATEALKDMKLRKCYSDE-CLPGKPKVVFGSKSSTSDFYVRNKAYGDFLNDNFDAKTADTASASVALTSLSNEKLFVVFQGVSNVAG 277

HSP 2 Score: 32.7278 bits (73), Expect = 1.411e-23
Identity = 16/30 (53.33%), Postives = 19/30 (63.33%), Query Frame = -3 
Query:  676 WKAFKSETGQLPELDFGAFNFPVRGKNLSG 765
            WK F SE G+L    FG FN+P  G+NL G
Sbjct:  135 WKKFGSEKGKLV---FGDFNYPENGENLLG 161
The following BLAST results are available for this feature:
BLAST of CF833018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BSPB_POPDE8.333e-2437.40Bark storage protein B OS=Populus deltoides GN=BSP... [more]
BSPA_POPDE1.411e-2337.40Bark storage protein A OS=Populus deltoides GN=BSP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02N05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833018 ID=CF833018; Name=CF833018; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTTTTTTTTGAAATTGCCTTCAAGCTTTCGAGATCACTCCTCTG
TCAATTTTGATTAAGTAGCTGACTATAGTATTAGAAGTAGACTCTTAACG
GATTGGTTTTTTTCACGGCGAGAATACAAGTACGGAAAACAGAAATAGAA
GTAGAATCCTCGAGTTCGATTCAATCATTAACATTCAAAATGCATAGGAT
AACTGTCTTTACTGATCATGGACTAAGTTATTCTTATCAATTAGCGCGAT
AAACTCAGCTGCAACCCTCAAAGCAGTTGATAGAAGCTAACGAAATACGG
CTGATTGACAACAGTCTGTCACTGCCACCTCCTAAATCAGAAACTCCTCG
GAAGACAATAGAGGGCACTGCATTTGACAGACACGCCATCACAATGGCAG
CACTCTCTTCATCAACAGGCGAGACATTAAATTGTTTGAAAAGAAATTCC
CTATATGCTGCATTATCGAGGAATATATCTGCGGTGGAACCCCTTAGTCC
AACAATGACTTTTGGTCTCTCTGGCAGGCAGTATGTGTCATTCAAACATC
GTCTTAACTCTAAATCCTGAAGTTGAGTGGCAATATCAAACCACTCTGAA
TCGACGGGGAGCCAGAACAACTCTTCCATTGGTTTACCAGCAGAATATAA
CTGGCTTGGGGTGAACTCCGCCTTTGCCAGACAAATTCTTCCCTCTTACA
GGAAAATTAAAGGCTCCAAAATCTAGTTCTGGTAATTGACCTGTCTCCGA
CTTGAATGCCTTCCATT
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