CF833019

Overview
NameCF833019
Unique NameCF833019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833019 vs. ExPASy Swiss-Prot
Match: BSPA_POPDE (Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 78/183 (42.62%), Postives = 115/183 (62.84%), Query Frame = 3
Query:  135 IGLVMAYPPEELALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTGNSGITVQILLDAFDIRGVVHYGTAGS-SNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQ-LQDLELRQCLND 677
            +GLV      E AL  S L+  +S    +D+AGRRF+ G +    ++YV TG  + N   T+QILL  F+I GV+++G AGS    ++  GDVSV + VAFTG W WK F SE G+L    FG FN+P  G+NLL  VE+   +++S  +  +E+FWLP+   W++ AT+ L+D++LR+C +D
Sbjct:   29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMATTLQILLVRFNIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVWNWKKFGSEKGKLV---FGDFNYPENGENLLGTVEYEKIKMFSPSEAPKEVFWLPITKSWYNAATEALKDMKLRKCYSD 208          
BLAST of CF833019 vs. ExPASy Swiss-Prot
Match: BSPB_POPDE (Bark storage protein B OS=Populus deltoides GN=BSP PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35
Identity = 83/211 (39.34%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   51 MAQHTEQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEELALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTGNSGITVQILLDAFDIRGVVHYGTAGS-SNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQ-LQDLELRQCLND 677
            M Q + Q     P+  I     +I    +GLV      E AL  S L+  +S    +D+AGRRF+ G +    ++YV TG  + N   T+QILL  F I GV+++G AGS    ++  GDVSV + VAFTG   WK F+SE G+L    FG FN+P  G+NLL  VE+   +++S  +  +E+FWLP+   W++ AT+ L+D++LR+C +D
Sbjct:    1 MPQQSMQASLRDPIAEIERSNCKIAHLRLGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMATTLQILLARFSIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVCNWKKFRSEKGKLV---FGDFNYPENGENLLGTVEYEKIKMFSPSEAPKEVFWLPITKSWYNAATEALKDMKLRKCYSD 208          
The following BLAST results are available for this feature:
BLAST of CF833019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BSPA_POPDE2.115e-3542.62Bark storage protein A OS=Populus deltoides GN=BSP... [more]
BSPB_POPDE8.038e-3539.34Bark storage protein B OS=Populus deltoides GN=BSP... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02N05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833019 ID=CF833019; Name=CF833019; organism=Citrus sinensis; type=EST; length=688bp
TTCTGGATGTCCAGTCAGTGGTGATGTTGGGACTGGGACTATTGTTCGCC
ATGGCACAACACACGGAGCAGCTGAGGAGTAATCACCCAATGCATGGGAT
TGTTGATAGAGTCAACGAAATTGGAGGGCCTTATATTGGACTTGTCATGG
CTTATCCTCCTGAAGAATTGGCTCTCATCACTTCCCGTTTATTTGTTCAC
AACTCACGGATCCCCTTCATTGACTTGGCTGGAAGAAGATTCAACGTGGG
GAAGATTAAGAACGTTGATGTAATCTATGTAATGACTGGGGAGCAAACGG
GAAATTCAGGCATAACAGTACAAATTCTACTTGATGCATTTGATATTCGA
GGGGTAGTCCATTATGGCACAGCTGGAAGCAGTAATAATTCTTTGTCCTT
TGGTGATGTTAGTGTGATGAAGTATGTAGCTTTTACGGGTTCTTGGAAAT
GGAAGGCATTCAAGTCGGAGACAGGTCAATTACCAGAACTAGATTTTGGA
GCCTTTAATTTTCCTGTAAGAGGGAAGAATTTGCTGGCAAAGGTGGAGTT
CACACCAAGCCAGTTATATTCTGCTGGTAAACCAATGGAAGAGTTGTTCT
GGCTCCCCGTCGATTCAGAGTGGTTTGATATTGCCACTCAACTTCAGGAT
TTAGAGTTAAGACAATGTTTGAATGACACATACTGCCT
back to top