CF833024

Overview
NameCF833024
Unique NameCF833024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833024_ssr122 microsatellite CF833024_ssr122:122..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:152..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKTC_CRAPL (Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.445e-62
Identity = 122/152 (80.26%), Postives = 131/152 (86.18%), Query Frame = -1
Query:  313 KRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 768
            KRPS+LALSRQKLP L GTSI+GVEKG Y+ISDNSSGNKPDVILIGTGS           LRK GK VRVVSFVSWELFDEQS  YKESVLP++V+ARVSIEAGSTFGW KIVGSKGKAIGIDRFGASAPAGKIY+EFGIT EAV+ AAKE+
Sbjct:  367 KRPSVLALSRQKLPQLPGTSIEGVEKGGYVISDNSSGNKPDVILIGTGSELEIAAKAGEVLRKEGKGVRVVSFVSWELFDEQSKEYKESVLPSSVTARVSIEAGSTFGWGKIVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKTC_SPIOL (Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.996e-61
Identity = 120/154 (77.92%), Postives = 132/154 (85.71%), Query Frame = -1
Query:  310 RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 771
            RK PSILALSR+KLP+L GTSI+GVEKG Y I+DNSSGNKPDVILIGTGS           LRK GKAVRVVSFVSWELF++QSD YKESVLP+ V+ARVSIEAGSTFGW KIVGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK VC
Sbjct:  588 RKTPSILALSRKKLPNLPGTSIEGVEKGGYTITDNSSGNKPDVILIGTGSELEIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESVLPSDVTARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSVC 741          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKTC_MAIZE (Transketolase, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.572e-59
Identity = 115/151 (76.16%), Postives = 129/151 (85.43%), Query Frame = -1
Query:  319 RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 771
            RKRPSILALSRQKLPHL GTSI+GVEKG Y ISDNS+GNKPD+I++GTGS           LRK GK VRVVSFVSWELFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+GIT E++I AAK
Sbjct:  523 RKRPSILALSRQKLPHLPGTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAK 673          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKTC_SOLTU (Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.277e-58
Identity = 117/153 (76.47%), Postives = 127/153 (83.01%), Query Frame = -1
Query:  313 RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 771
            RK PSILALSRQKLP LAGTSI+G  KG YI+SDNSSGNKPDVILIGTGS           L+K GK VRVVSFV WEL+DEQS  YKESVLP++V+ARVSIEAGSTFGW+K VG KGKAIGID FGASAPA KIYKEFGITAEAV+ AAK+V
Sbjct:  588 RKTPSILALSRQKLPQLAGTSIEGAAKGGYIVSDNSSGNKPDVILIGTGSELEIAVKAAEELKKEGKTVRVVSFVCWELYDEQSAEYKESVLPSSVTARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAKQV 740          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT7_CRAPL (Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.109e-53
Identity = 105/155 (67.74%), Postives = 124/155 (80.00%), Query Frame = -1
Query:  310 KRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSG--NKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 768
            +RPSIL L+RQKLP L GTSI+GV KG Y+ISDNS G  +KPDVILIGTGS           LRK GK VRVVS V WELF EQS+ Y+E+VLP+ V+ARVS+EAGSTFGWE+ +G KGKA+GIDRFGASAPA +++KEFGIT EAV+ AAKE+C
Sbjct:  522 ERPSILVLARQKLPQLPGTSIEGVSKGGYVISDNSRGGNSKPDVILIGTGSELEIAARAGDELRKEGKKVRVVSLVCWELFAEQSEKYRETVLPSGVTARVSVEAGSTFGWERFIGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAAKEIC 676          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKTA_CRAPL (Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.157e-51
Identity = 104/153 (67.97%), Postives = 121/153 (79.08%), Query Frame = -1
Query:  310 RPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSS-GNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 765
            RPSIL+LSRQKLP L GTS++GV +G Y+ISDNS  G KP+VIL+GTGS           LRK GK VRVVS VSWELF EQS  YKE VLP+ V+ARVS+EAGSTFGWE+ VG KG+A+GIDRFGASA A ++YKEFGIT EAV+ AAKE+C
Sbjct:  527 RPSILSLSRQKLPQLPGTSVEGVGRGGYVISDNSKDGEKPEVILMGTGSELEIAARAGEELRKEGKKVRVVSLVSWELFGEQSKEYKEMVLPSEVTARVSVEAGSTFGWERFVGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAKELC 679          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_ANASP (Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 78/150 (52.00%), Postives = 103/150 (68.67%), Query Frame = -1
Query:  313 PSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 762
            P++LA +RQ +P+LAGTSID V KG YI+ D      PD+ILIGTGS           L+  GK VRVVS  +W+LFD Q  AYKESVLP AV+ R+++EA S+FGW K +GS+G A+ IDRFGASAP G   ++FG + + V+  AK++
Sbjct:  521 PTLLAFTRQNVPNLAGTSIDDVAKGGYIVVDTDG--TPDLILIGTGSELSLCVTAAEKLKAEGKKVRVVSLAAWDLFDAQDAAYKESVLPKAVTKRLAVEAASSFGWHKYIGSEGDAVTIDRFGASAPGGVCLEKFGFSVDNVLAKAKQL 668          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_STRP8 (Transketolase OS=Streptococcus pyogenes serotype M18 GN=tkt PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.067e-28
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = -1
Query:  346 RPSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 765
            RP++L L+RQ LP L GT   + DG+ KGAYI+S+  +    D I+I TGS           L   G  VRVVS  S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  578 RPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSE--AKGDLDGIIIATGSEVKLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_BACHD (Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 68/154 (44.16%), Postives = 94/154 (61.04%), Query Frame = -1
Query:  319 RKRPSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 771
            + +P+ L LSRQ LP L G    + DGV KGAY+++   +    D++L+ +GS           L K G    VVS  SW+ F+ QS  YKE VLP+ V+AR++IE GS+ GW K VG++G  + IDRFGASAP  +I +EFG T + V+  AK
Sbjct:  509 KDQPTALVLSRQNLPTLEGAVDRAYDGVSKGAYVLAP--ANGSADLLLLASGSEVSLAVNAKEALEKEGIHAAVVSMPSWDRFEAQSAEYKEEVLPSDVTARLAIEMGSSLGWAKYVGNQGDVVAIDRFGASAPGERIMEEFGFTVQHVVARAK 660          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_STRP6 (Transketolase OS=Streptococcus pyogenes serotype M6 GN=tkt PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = -1
Query:  346 RPSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 765
            RP++L L+RQ LP L GT   + DG+ KGAYI+S+  +    + ILI TGS           L   G  VRVVS  S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  578 RPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSE--AKGDLEGILIATGSEVKLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
The following BLAST results are available for this feature:
BLAST of CF833024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TKTC_CRAPL9.445e-6280.26Transketolase, chloroplastic (Fragment) OS=Cratero... [more]
TKTC_SPIOL7.996e-6177.92Transketolase, chloroplastic OS=Spinacia oleracea ... [more]
TKTC_MAIZE2.572e-5976.16Transketolase, chloroplastic OS=Zea mays PE=1 SV=1[more]
TKTC_SOLTU1.277e-5876.47Transketolase, chloroplastic OS=Solanum tuberosum ... [more]
TKT7_CRAPL2.109e-5367.74Transketolase 7 OS=Craterostigma plantagineum GN=T... [more]
TKTA_CRAPL1.157e-5167.97Transketolase 10 OS=Craterostigma plantagineum GN=... [more]
TKT_ANASP1.052e-3652.00Transketolase OS=Anabaena sp. (strain PCC 7120) GN... [more]
TKT_STRP83.067e-2850.35Transketolase OS=Streptococcus pyogenes serotype M... [more]
TKT_BACHD4.005e-2844.16Transketolase OS=Bacillus halodurans GN=tkt PE=3 S... [more]
TKT_STRP65.231e-2850.35Transketolase OS=Streptococcus pyogenes serotype M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02N09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833024 ID=CF833024; Name=CF833024; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTGATGATGGACGAGCAAATTTGCATCAAAATCAACAGGAAACA
TTACAAATCTCAAGATAGGTCCAAGAGTTTGATACAAATTCATGAACATG
AACAAGCCCTACTCTCTCTCCCTCTCTCTCTCTTCAATCTACGATGCTCT
GCAGTGGAATAATAAGCAAAAGGAAGAAAAATAATCTTGCTTTTATTAAA
ACAAGAGAGACCATAATGAAGCAACTCTCTTGGGAATGGTCTCTTCACTG
TAATCACCAATTCCCAAATGCATATGGAATAATAAGAAGTTTTTGACTAA
CCAAGCTTAGCAGACTTCTTTGGCTGCAGTGATAACAGCCTCCGCGGTGA
TACCAAACTCCTTGTATATTTTGCCTGCTGGTGCACTAGCACCGAATCGG
TCAATGCCGATGGCCTTTCCTTTGCTTCCAACAATCTTCTCCCACCCAAA
TGTAGATCCAGCTTCAATGCTAACTCTAGCTGAGACAGCAGCCGGAAGCA
CACTTTCCTTGTAGGCATCTGATTGCTCATCAAAAAGCTCCCAAGAAACA
AAGGAGACAACTCTTACAGCCTTTCCTCCCTTTCTAAGTTCCTCAGCTGC
TTTGGCGGCAATTTCCAATTCAGAACCAGTTCCAATCAAAATGACATCAG
GTTTGTTACCAGAAGAATTGTCCGAAATTATGTAGGCACCCTTTTCAACA
CCATCAATGGAAGTTCCAGCAAGGTGGGGAAGCTTTTGCCGGGAAAGGGC
AAGGATGGACGGTCTCTTCCT
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