CF833026

Overview
NameCF833026
Unique NameCF833026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833026_ssr122 microsatellite CF833026_ssr122:122..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:188..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKTC_CRAPL (Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.494e-56
Identity = 112/141 (79.43%), Postives = 120/141 (85.11%), Query Frame = -1
Query:  313 KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 735
            KLP L GTSI+GVEKG Y+ISDNSSGNKPDVILIGTGS           LRK GK VRVVSFVSWELFDEQS  YKESVLP++V+ARVSIEAGSTFGW KIVGSKGKAIGIDRFGASAPAGKIY+EFGIT EAV+ AAKE+
Sbjct:  378 KLPQLPGTSIEGVEKGGYVISDNSSGNKPDVILIGTGSELEIAAKAGEVLRKEGKGVRVVSFVSWELFDEQSKEYKESVLPSSVTARVSIEAGSTFGWGKIVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKTC_SPIOL (Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 110/142 (77.46%), Postives = 121/142 (85.21%), Query Frame = -1
Query:  310 KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 735
            KLP+L GTSI+GVEKG Y I+DNSSGNKPDVILIGTGS           LRK GKAVRVVSFVSWELF++QSD YKESVLP+ V+ARVSIEAGSTFGW KIVGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK VC
Sbjct:  600 KLPNLPGTSIEGVEKGGYTITDNSSGNKPDVILIGTGSELEIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESVLPSDVTARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSVC 741          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKTC_SOLTU (Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.425e-53
Identity = 106/141 (75.18%), Postives = 116/141 (82.27%), Query Frame = -1
Query:  313 KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 735
            KLP LAGTSI+G  KG YI+SDNSSGNKPDVILIGTGS           L+K GK VRVVSFV WEL+DEQS  YKESVLP++V+ARVSIEAGSTFGW+K VG KGKAIGID FGASAPA KIYKEFGITAEAV+ AAK+V
Sbjct:  600 KLPQLAGTSIEGAAKGGYIVSDNSSGNKPDVILIGTGSELEIAVKAAEELKKEGKTVRVVSFVCWELYDEQSAEYKESVLPSSVTARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAKQV 740          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKTC_MAIZE (Transketolase, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.425e-53
Identity = 103/139 (74.10%), Postives = 117/139 (84.17%), Query Frame = -1
Query:  319 KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 735
            KLPHL GTSI+GVEKG Y ISDNS+GNKPD+I++GTGS           LRK GK VRVVSFVSWELFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+GIT E++I AAK
Sbjct:  535 KLPHLPGTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAK 673          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKT7_CRAPL (Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = -1
Query:  310 KLPHLAGTSIDGVEKGAYIISDNSSG--NKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 735
            KLP L GTSI+GV KG Y+ISDNS G  +KPDVILIGTGS           LRK GK VRVVS V WELF EQS+ Y+E+VLP+ V+ARVS+EAGSTFGWE+ +G KGKA+GIDRFGASAPA +++KEFGIT EAV+ AAKE+C
Sbjct:  533 KLPQLPGTSIEGVSKGGYVISDNSRGGNSKPDVILIGTGSELEIAARAGDELRKEGKKVRVVSLVCWELFAEQSEKYRETVLPSGVTARVSVEAGSTFGWERFIGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAAKEIC 676          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKTA_CRAPL (Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.038e-46
Identity = 95/143 (66.43%), Postives = 111/143 (77.62%), Query Frame = -1
Query:  310 KLPHLAGTSIDGVEKGAYIISDNSS-GNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 735
            KLP L GTS++GV +G Y+ISDNS  G KP+VIL+GTGS           LRK GK VRVVS VSWELF EQS  YKE VLP+ V+ARVS+EAGSTFGWE+ VG KG+A+GIDRFGASA A ++YKEFGIT EAV+ AAKE+C
Sbjct:  537 KLPQLPGTSVEGVGRGGYVISDNSKDGEKPEVILMGTGSELEIAARAGEELRKEGKKVRVVSLVSWELFGEQSKEYKEMVLPSEVTARVSVEAGSTFGWERFVGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAKELC 679          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKT_ANASP (Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.246e-33
Identity = 73/140 (52.14%), Postives = 95/140 (67.86%), Query Frame = -1
Query:  313 LPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 732
            +P+LAGTSID V KG YI+ D      PD+ILIGTGS           L+  GK VRVVS  +W+LFD Q  AYKESVLP AV+ R+++EA S+FGW K +GS+G A+ IDRFGASAP G   ++FG + + V+  AK++
Sbjct:  531 VPNLAGTSIDDVAKGGYIVVDTDG--TPDLILIGTGSELSLCVTAAEKLKAEGKKVRVVSLAAWDLFDAQDAAYKESVLPKAVTKRLAVEAASSFGWHKYIGSEGDAVTIDRFGASAPGGVCLEKFGFSVDNVLAKAKQL 668          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKT_BACHD (Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = -1
Query:  319 LPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 732
            LP L G    + DGV KGAY+++   +    D++L+ +GS           L K G    VVS  SW+ F+ QS  YKE VLP+ V+AR++IE GS+ GW K VG++G  + IDRFGASAP  +I +EFG T + V+  AK
Sbjct:  522 LPTLEGAVDRAYDGVSKGAYVLAP--ANGSADLLLLASGSEVSLAVNAKEALEKEGIHAAVVSMPSWDRFEAQSAEYKEEVLPSDVTARLAIEMGSSLGWAKYVGNQGDVVAIDRFGASAPGERIMEEFGFTVQHVVARAK 660          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKT_STRP8 (Transketolase OS=Streptococcus pyogenes serotype M18 GN=tkt PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = -1
Query:  346 LPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 732
            LP L GT   + DG+ KGAYI+S+  +    D I+I TGS           L   G  VRVVS  S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  589 LPVLEGTKELAEDGLNKGAYILSE--AKGDLDGIIIATGSEVKLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
BLAST of CF833026 vs. ExPASy Swiss-Prot
Match: TKT_STRP6 (Transketolase OS=Streptococcus pyogenes serotype M6 GN=tkt PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = -1
Query:  346 LPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 732
            LP L GT   + DG+ KGAYI+S+  +    + ILI TGS           L   G  VRVVS  S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  589 LPVLEGTKELAEDGLNKGAYILSE--AKGDLEGILIATGSEVKLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
The following BLAST results are available for this feature:
BLAST of CF833026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
TKTC_CRAPL5.494e-5679.43Transketolase, chloroplastic (Fragment) OS=Cratero... [more]
TKTC_SPIOL1.598e-5577.46Transketolase, chloroplastic OS=Spinacia oleracea ... [more]
TKTC_SOLTU7.425e-5375.18Transketolase, chloroplastic OS=Solanum tuberosum ... [more]
TKTC_MAIZE7.425e-5374.10Transketolase, chloroplastic OS=Zea mays PE=1 SV=1[more]
TKT7_CRAPL8.495e-4967.36Transketolase 7 OS=Craterostigma plantagineum GN=T... [more]
TKTA_CRAPL1.038e-4666.43Transketolase 10 OS=Craterostigma plantagineum GN=... [more]
TKT_ANASP2.246e-3352.14Transketolase OS=Anabaena sp. (strain PCC 7120) GN... [more]
TKT_BACHD1.459e-2443.97Transketolase OS=Bacillus halodurans GN=tkt PE=3 S... [more]
TKT_STRP81.906e-2450.00Transketolase OS=Streptococcus pyogenes serotype M... [more]
TKT_STRP63.251e-2450.00Transketolase OS=Streptococcus pyogenes serotype M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02N10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833026 ID=CF833026; Name=CF833026; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTGATCATGGACGAGCAAATTTGCATCAAAATCAACAGGAAACA
TTACAAATCTCAAGATAGGTCCAAGAGTTTGATACAAATTCATGAACATG
AACAAGCCCTACTCTCTCTCCCTCTCTCTCTCTTCAATCTACGATGCTCT
GCAGTGGAATAATAAGCAAAAGGAAGAAAAATAATCTTGCTTTTATTAAA
ACAAGAGAGACCATAATGAAGCAACTCTCTTGGGAATGGTCTCTTCACTG
TAATCACCAATTCCCAAATGCATATGGAATAATAAGAAGTTTTTGACTAA
CCAAGCTTAGCAGACTTCTTTGGCTGCAGTGATAACAGCCTCCGCGGTGA
TACCAAACTCCTTGTATATTTTGCCTGCTGGTGCACTAGCACCGAATCGG
TCAATGCCGATGGCCTTTCCTTTGCTTCCAACAATCTTCTCCCACCCAAA
TGTAGATCCAGCTTCAATGCTAACTCTAGCTGAGACAGCAGCCGGAAGCA
CACTTTCCTTGTAGGCATCTGATTGCTCATCAAAAAGCTCCCAAGAAACA
AAGGAGACAACTCTTACAGCCTTTCCTCCCTTTCTAAGTTCCTCAGCTGC
TTTGGCGGCAATTTCCAATTCAGAACCAGTTCCAATCAAAATGACATCAG
GTTTGTTACCAGAAGAATTGTCCGAAATTATGTAGGCACCCTTTTCAACA
CCATCAATGGAAGTTCCAGCAAGGTGGGGAAGCTT
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