CF833044

Overview
NameCF833044
Unique NameCF833044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2998 contig Csv1_Contig2998:704..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_DICDI (Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.498e-35
Identity = 70/112 (62.50%), Postives = 91/112 (81.25%), Query Frame = -3
Query:    1 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTGAKVLSNT*SKKKKK 336
            MPQGD+IELH+KR G RLDH+E+ RKK AR  H+RS IAQK  G+K K++ KKRY+EKA MKKT+AMH+E ++++  DD+V+EGAVPAYLLDRE  + AKVLSN   +K+K+
Sbjct:    1 MPQGDHIELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAEMKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKE 112          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_HUMAN (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=TINP1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.941e-32
Identity = 64/112 (57.14%), Postives = 90/112 (80.36%), Query Frame = -3
Query:    1 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTGAKVLSNT*SKKKKK 336
            MPQ +YIELHRKR G RLD+ E+KRKKE+RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  + AKVLSN   +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_RAT (Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Tinp1 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.759e-32
Identity = 64/112 (57.14%), Postives = 89/112 (79.46%), Query Frame = -3
Query:    1 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTGAKVLSNT*SKKKKK 336
            MPQ +YIELHRKR G RLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  + AKVLSN   +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_MOUSE (Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Tinp1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.759e-32
Identity = 64/112 (57.14%), Postives = 89/112 (79.46%), Query Frame = -3
Query:    1 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTGAKVLSNT*SKKKKK 336
            MPQ +YIELHRKR G RLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  + AKVLSN   +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_BOVIN (Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=TINP1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.759e-32
Identity = 64/112 (57.14%), Postives = 89/112 (79.46%), Query Frame = -3
Query:    1 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTGAKVLSNT*SKKKKK 336
            MPQ +YIELHRKR G RLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  + AKVLSN   +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_CANGA (Ribosome biogenesis protein NSA2 OS=Candida glabrata GN=NSA2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.124e-25
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = -3
Query:    7 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTGAKVLSNT*SKKK 336
            MPQ DYIE H K++G RLD+ ERKRK+EAREVH+ +E AQK  G KGK F KKRYAEK  M+K +  HE+S ++         G A+P YLLDRE T  AK +S++  +K+
Sbjct:    1 MPQNDYIERHIKQHGRRLDYEERKRKREAREVHKVAEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKAKGSSKPLADNGEALPTYLLDREQTNTAKAISSSIKQKR 111          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_ASHGO (Ribosome biogenesis protein NSA2 OS=Ashbya gossypii GN=NSA2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.386e-25
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = -3
Query:    7 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTGAKVLSNT*SKKK 336
            MPQ +YIE H K++G RLDH ERKRK+EARE H+ SE AQK  G KGK F KKRYAEK  M+K +  HE+S  +         G A+PAYLLDRE    AK +S++  +K+
Sbjct:    1 MPQNEYIEQHIKKHGRRLDHEERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKLKGAAKPLEDSGEALPAYLLDREQANSAKAISSSIKQKR 111          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_KLULA (Ribosome biogenesis protein NSA2 OS=Kluyveromyces lactis GN=NSA2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.567e-24
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = -3
Query:    7 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTGAKVLSNT*SKKK 336
            MPQ +YIE H K++G RLDH ERKRK+EARE H+ SE AQK  G KGK F KKRYAEK  MKK +  HE+S  +   K  DE  E A+P YLLDRE    AK +S++  +K+
Sbjct:    1 MPQNEYIEQHIKQHGRRLDHDERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMKKKIRAHEQSKVKGGSKPLDENGE-ALPTYLLDREQNNTAKAISSSIKQKR 111          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_YEAST (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae GN=NSA2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.491e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = -3
Query:    7 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTGAKVLSNT*SKKK 336
            MPQ DYIE H K++G RLDH ERKRK+EARE H+ SE AQK  G KGK F KKRYAEK  M+K +  HE+S  +        +G A+P YLLDRE    AK +S++  +K+
Sbjct:    1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111          
BLAST of CF833044 vs. ExPASy Swiss-Prot
Match: NSA2_YEAS7 (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae (strain YJM789) GN=NSA2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.491e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = -3
Query:    7 MPQGDYIELHRKRNGCRLDHFERKRKKEAREVHQRSEIAQKALGIKGKMFVKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTGAKVLSNT*SKKK 336
            MPQ DYIE H K++G RLDH ERKRK+EARE H+ SE AQK  G KGK F KKRYAEK  M+K +  HE+S  +        +G A+P YLLDRE    AK +S++  +K+
Sbjct:    1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111          
The following BLAST results are available for this feature:
BLAST of CF833044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NSA2_DICDI7.498e-3562.50Ribosome biogenesis protein NSA2 homolog OS=Dictyo... [more]
NSA2_HUMAN5.941e-3257.14Ribosome biogenesis protein NSA2 homolog OS=Homo s... [more]
NSA2_RAT7.759e-3257.14Ribosome biogenesis protein NSA2 homolog OS=Rattus... [more]
NSA2_MOUSE7.759e-3257.14Ribosome biogenesis protein NSA2 homolog OS=Mus mu... [more]
NSA2_BOVIN7.759e-3257.14Ribosome biogenesis protein NSA2 homolog OS=Bos ta... [more]
NSA2_CANGA4.124e-2553.15Ribosome biogenesis protein NSA2 OS=Candida glabra... [more]
NSA2_ASHGO5.386e-2553.15Ribosome biogenesis protein NSA2 OS=Ashbya gossypi... [more]
NSA2_KLULA1.567e-2455.36Ribosome biogenesis protein NSA2 OS=Kluyveromyces ... [more]
NSA2_YEAST3.491e-2453.15Ribosome biogenesis protein NSA2 OS=Saccharomyces ... [more]
NSA2_YEAS73.491e-2453.15Ribosome biogenesis protein NSA2 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02N24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833044 ID=CF833044; Name=CF833044; organism=Citrus sinensis; type=EST; length=356bp
TTTTTTTTTTTTTTTGCTTTAAGTGTTGCTAAGCACCTTCGCTCCTGTTG
TGTTTTCACGATCAAGCAAATAAGCAGGAACAGCACCCTCTTGAACTTCA
TCATCCACCTTTCTACGACTTGATGACTCTTCATGCATAGCCAAAGTTTT
CTTCATGAGAGCCTTCTCAGCATAGCGTTTTTTAACAAACATCTTGCCCT
TAATACCCAAAGCCTTTTGGGCAATTTCGGAGCGCTGATGGACTTCACGC
GCCTCCTTCTTGCGCTTGCGCTCGAAGTGATCAAGACGGCAGCCATTTCG
CTTCCTGTGAAGCTCTATGTAATCTCCTTGCGGCATTTCGCAAGGGCTTT
GAAGCC
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