CF833056

Overview
NameCF833056
Unique NameCF833056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13741 contig Csv1_Contig13741:77..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.420e-94
Identity = 164/176 (93.18%), Postives = 171/176 (97.16%), Query Frame = 3
Query:   15 SFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 542
            +FRFHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct:    3 TFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 344.739 bits (883), Expect = 3.420e-94
Identity = 164/176 (93.18%), Postives = 170/176 (96.59%), Query Frame = 3
Query:   15 SFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 542
            +FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct:    3 AFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 2.217e-93
Identity = 162/175 (92.57%), Postives = 168/175 (96.00%), Query Frame = 3
Query:   18 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 542
            FRFHQYQVVGRALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.030e-90
Identity = 157/176 (89.20%), Postives = 168/176 (95.45%), Query Frame = 3
Query:   15 SFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 542
            +FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct:    3 AFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.170e-50
Identity = 96/171 (56.14%), Postives = 122/171 (71.35%), Query Frame = 3
Query:   27 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 539
            H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R +TKQFH+SKIKFPL  R       K ++T+ A RPN F
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.408e-47
Identity = 89/170 (52.35%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   30 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 539
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.408e-47
Identity = 89/170 (52.35%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   30 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 539
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 89/170 (52.35%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   30 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 539
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 89/170 (52.35%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   30 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 539
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833056 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.137e-47
Identity = 87/170 (51.18%), Postives = 123/170 (72.35%), Query Frame = 3
Query:   30 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 539
            +Y+V+GR LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R   KQFHNS I+FPL     R    K   T+   RP+ +
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTY 175          
The following BLAST results are available for this feature:
BLAST of CF833056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA3.420e-9493.1860S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A2_ARATH3.420e-9493.1860S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH2.217e-9392.5760S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_ORYSJ1.030e-9089.2060S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DICDI5.170e-5056.1460S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_HUMAN1.408e-4752.3560S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN1.408e-4752.3560S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT2.402e-4752.3560S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE2.402e-4752.3560S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_SPOFR3.137e-4751.1860S ribosomal protein L18a OS=Spodoptera frugiperd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833056 ID=CF833056; Name=CF833056; organism=Citrus sinensis; type=EST; length=802bp
CCCTTTCTCAATGGTCCTTTCGGTTTCACCAGTATCAGGTTGTTGGGAGA
GCTCTTCCAACTGAGTCCGATGAGCATCCTAAGATTTACAGGATGAAGTT
GTGGGCCACGAATGAGGTTCGAGCCAAGTCCAAGTTCTGGTACTTTCTTA
GAAAGCTCAAGAAGGTCAAGAAGAGTAATGGTCAAATGCTTGCCATTAAC
GAGATTTTTGAGAAGAACCCAACCAAGATCAAGAACTATGGCATCTGGTT
GCGTTATCAGAGTCGAACTGGTTATCACAATATGTACAAGGAGTACCGTG
ATACCACTCTGAACGGGGCTGTGGAGCAGATGTACACTGAGATGGCTTCT
CGCCATAGGGTCAGGTCTCCTTGCATTCAAATTATCAAGACTGCTACCAT
CCCTGCCAAGCTATGCAAGAGAGAAAGCACCAAGCAGTTCCACAATTCAA
AAATCAAGTTTCCCTTGGTGTTCAGGAAGGTGAGACCACCAAGCAGGAAG
CTGAGGACCACATACAAAGCAACAAGGCCTAACTTGTTTATGTAACTCTC
TTATCCTTTGATAATTGAGACTTCAAGAGGGTTTAACAGTGGATATCTAT
CTATTTTTCTAAGAATATTTTTGGTAGTTACCTTTATGTCAGTTGTTTTT
GTTCAACGGATACCTGTTTTTATGTTGAGAATATTAGGTGTTGAGACTAG
CGAACCTGATCTTTGGGATTGCAAAATTTATGTTTTTGTTACCGATTATG
TTGCTATTGGATGCTATTAAATGTTTGGTTTTCCAGTTAAAAAAAAAAAA
AA
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