CF833057

Overview
NameCF833057
Unique NameCF833057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13741 contig Csv1_Contig13741:156..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 6.675e-83
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = -1
Query:  264 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 725
            KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct:   25 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.651e-82
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = -1
Query:  264 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 725
            KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct:   25 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.374e-80
Identity = 142/154 (92.21%), Postives = 147/154 (95.45%), Query Frame = -1
Query:  264 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 725
            KIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct:   25 KIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.974e-79
Identity = 139/154 (90.26%), Postives = 148/154 (96.10%), Query Frame = -1
Query:  264 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 725
            KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct:   25 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.504e-42
Identity = 85/153 (55.56%), Postives = 107/153 (69.93%), Query Frame = -1
Query:  267 KIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 725
            KIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R +TKQFH+SKIKFPL  R       K ++T+ A RPN F
Sbjct:   22 KIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.965e-42
Identity = 80/152 (52.63%), Postives = 111/152 (73.03%), Query Frame = -1
Query:  267 IYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 722
            +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   27 LYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.965e-42
Identity = 80/152 (52.63%), Postives = 111/152 (73.03%), Query Frame = -1
Query:  267 IYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 722
            +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   27 LYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.351e-42
Identity = 80/152 (52.63%), Postives = 111/152 (73.03%), Query Frame = -1
Query:  267 IYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 722
            +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   27 LYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.351e-42
Identity = 80/152 (52.63%), Postives = 111/152 (73.03%), Query Frame = -1
Query:  267 IYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 722
            +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   27 LYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CF833057 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.717e-42
Identity = 79/152 (51.97%), Postives = 111/152 (73.03%), Query Frame = -1
Query:  267 IYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 722
            +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++    +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   27 LYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
The following BLAST results are available for this feature:
BLAST of CF833057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
R18A2_ARATH6.675e-8394.8160S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
RL18A_CASSA5.651e-8294.8160S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A3_ARATH2.374e-8092.2160S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_ORYSJ9.974e-7990.2660S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DICDI1.504e-4255.5660S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_HUMAN1.965e-4252.6360S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN1.965e-4252.6360S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT3.351e-4252.6360S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE3.351e-4252.6360S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_DANRE5.717e-4251.9760S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833057 ID=CF833057; Name=CF833057; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTTTTAACTGGAAAACCAAACATTTAATAGCATCCAAT
AGCAACATAAACGGTAACAAAAACATAAATTTTGCAATCCCAAAGATCAG
GTTCGCTAGTCTCAACACCTAATATTCTCAACATAAAAACAGGTATCCGT
TGAACAAAAACAACTGACATAAAGGTAACTACCAAAAATATTCTTAGAAA
AATAGATAGATATCCACTGTTAAACCCTCTTGAAGTCTCAATTATCAAAG
GATAAGAGAGTTACATAAACAAGTTAGGCCTTGTTGCTTTGTATGTGGTC
CTCAGCTTCCTGCTTGGTGGTCTCACCTTCCTGAACACCAAGGGAAACTT
GATTTTTGAATTGTGGAACTGCTTGGTGCTTTCTCTCTTGCATAGCTTGG
CAGGGATGGTAGCAGTCTTGATAATTTGAATGCAAGGAGACCTGACCCTA
TGGCGAGAAGCCATCTCAGTGTACATCTGCTCCACAGCCCCGTTCAGAGT
GGTATCACGGTACTCCTTGTACATATTGTGATAACCAGTTCGACTCTGAT
AACGCAACCAGATGCCATAGTTCTTGATCTTGGTTGGGTTCTTCTCAAAA
ATCTCGTTAATGGCAAGCATTTGACCATTACTCTTCTTGACCTTCTTGAG
CTTTCTAAGAAAGTACCAGAACTTGGACTTGGCTCGAACCTCATTCGTGG
CCCACAACTTCATCCTGTAAATCTT
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