CF833065

Overview
NameCF833065
Unique NameCF833065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1035 contig Csv1_Contig1035:1..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.026e-31
Identity = 80/158 (50.63%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  349 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQVNSSAED---------SLNKCKEPGASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            MDWN K +  +   F+QE  P++  +D S     SS++K +FS DLKLG+   ++           SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+YH+RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFD
Sbjct:    1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFD 155          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.986e-28
Identity = 75/169 (44.38%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  349 MDWNLKP--AWDFTEFEQEAIPNVDAVDESS-------SRTKG-----NFSVDLKLGQVNS-SAEDSLNK----CKEP------GASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            MDW+LK   +WD  E E  A+PN+ A   ++       + ++G       SVDLKLG +    A D+L +     K P       AS  + P  + + KR R    G   Q  SC VDGC +DLS  RDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L EFD
Sbjct:    1 MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFD 169          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25
Identity = 73/172 (42.44%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  349 MDWNLK----PAWDFT-EFEQEAIPNVDAVDESSSRTKGN-----------FSVDLKLG------------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRAR--AANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            M+W+LK     +W+   E E      V A   SSS   G             SVDLKLG            +V  + E +  K     A+   + + S   KR R  AA    Q  SC VDGC  DLS CRDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L+EFD
Sbjct:    1 MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGGLGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFD 172          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.939e-22
Identity = 70/157 (44.59%), Postives = 84/157 (53.50%), Query Frame = 1
Query:  349 MDWNLK-PAWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLG-----------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTA--SCLVDGCDSDLSNC-RDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            MDW+ K P+WD           V           G  ++DLKLG              S+A  ++     P AS   S + +G  KRARA   G Q A  +C V+GC +DLS C RDYHRRHKVCE HSKT  V + GQ+QRFCQQCSRFH L EFD
Sbjct:    1 MDWDAKMPSWDLGTV-------VGPSGGGGGGGGGGGALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAG--KRARAGQ-GQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFD 147          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.641e-21
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  568 KRARAANNGSQ-----TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            +RAR  + G         +C VDGC SDLS CRDYHRRHKVCE H+KTP V++ GQ+QRFCQQCSRFH L EFD
Sbjct:   74 RRARGGSGGGGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFD 147          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL14_ARATH (Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.043e-20
Identity = 59/146 (40.41%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  352 DWNLKPAWDFTEFEQEAIPNVDAVDESSSRTKGNFS-----VDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            +WN K  WD+     EA P VD   +    T  N S     +DL LG   ++ E++         +  ++  P+   K+ R+ + G     C VD C  DLS+ +DYHRRHKVCE+HSK  + L+  Q QRFCQQCSRFH L EFD
Sbjct:   42 EWNSK-MWDWDSRRFEAKP-VDVEVQEFDLTLRNRSGEERGLDLNLGSGLTAVEET--------TTTTQNVRPN---KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFD 174          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL2_ARATH (Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20
Identity = 56/141 (39.72%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  376 DFTEFEQEAIPNVDA--VDESSSRT----KGNFSVDLKLGQVNSSAED--SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            +FT    E++P   A  +D S S       G+  + LKLG+  +  ED   +   K  G     + S     K++++     QT  C V+GC+ DLS+ +DYHR+H++CE HSK P+V++ G ++RFCQQCSRFHCL EFD
Sbjct:   84 NFTSETGESLPGEFAKGIDTSPSLELSFGSGDPVLGLKLGK-RTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFD 223          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSJ (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.006e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  460 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFD 236          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSI (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.006e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  460 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFD 236          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSJ (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.006e-19
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  553 PSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            PS   K+ + +   +Q++ C V+GC  DLS+ R+YHR+HKVCE HSK P+V++ G ++RFCQQCSRFH L EFD
Sbjct:  161 PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFD 234          
The following BLAST results are available for this feature:
BLAST of CF833065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SPL13_ARATH1.026e-3150.63Squamosa promoter-binding-like protein 13 OS=Arabi... [more]
SPL18_ORYSJ8.986e-2844.38Squamosa promoter-binding-like protein 18 OS=Oryza... [more]
SPL16_ORYSJ3.196e-2542.44Squamosa promoter-binding-like protein 16 OS=Oryza... [more]
SPL2_ORYSJ1.939e-2244.59Squamosa promoter-binding-like protein 2 OS=Oryza ... [more]
SPL19_ORYSJ1.641e-2163.51Putative squamosa promoter-binding-like protein 19... [more]
SPL14_ARATH4.043e-2040.41Squamosa promoter-binding-like protein 14 OS=Arabi... [more]
SPL2_ARATH6.896e-2039.72Squamosa promoter-binding-like protein 2 OS=Arabid... [more]
SPL3_ORYSJ2.006e-1945.37Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SPL3_ORYSI2.006e-1945.37Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SPL12_ORYSJ2.006e-1954.05Squamosa promoter-binding-like protein 12 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833065 ID=CF833065; Name=CF833065; organism=Citrus sinensis; type=EST; length=774bp
ACAATAAAATCATGAAGTTCAACTTATTAAAAAACTAAGTAAACTTCATA
AGAGAGCACTTCTTCTCTTTCACCAACCATCTTCTTAGCCTTTCTACATT
CAAGTTTATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTA
TCTTTGAGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATG
TCAGTGAATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCT
GTCTTGAAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGG
AGGGAATTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTAT
GGACTGGAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAG
CTATTCCTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGG
AATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGA
TTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTT
CACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAG
ACTGCGTCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAG
GGATTACCATAGGCGCCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTC
AGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGA
TTTCATTGCCTGGAGGAGTTTGAT
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