CF833080

Overview
NameCF833080
Unique NameCF833080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:598..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF833080 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 54/140 (38.57%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:    7 FPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKPADSKSWL 426
            F A+KA E++ LA+ GS+ S           A+  N+ +A   K    S  PV         EP   + P                  P S  C+LPIARR SLHRFLEKRKDRI ++APYQ++GSA A  KP  + +WL
Sbjct:  134 FSAEKAKEVIDLANKGSAKSFTC------FTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEP---IQPN-----------------PASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246
[Close]
BLAST of CF833080 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:  109 YNSFAASLPKSPVE-STPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPC-DLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKP--ADSKSWLGLAAQ 441
            +N F+A   K  +  ++   +    K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APYQ+   A A   P    + SWLGLAA+
Sbjct:  138 FNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWLGLAAE 252
The following BLAST results are available for this feature:
BLAST of CF833080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10B_ARATH4.466e-1438.57Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH6.036e-1137.39Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02O22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833080 ID=CF833080; Name=CF833080; organism=Citrus sinensis; type=EST; length=677bp
CGGTATTTTCCTGCTGATAAAGCAAATGAAATCATGCAATTAGCAAGCAA
CGGGAGCTCACTGAGCCATGGTACCGCATATCCTCCTATGCAACTGCCGG
CCCAGGGTTACAACTCTTTTGCTGCTAGTTTACCCAAAAGTCCAGTTGAA
TCAACTCCCCCGGTTTCTCCTGGCCCCCCAAAAATTCTAACAGAGCCTAG
TTGCTCGGTTCCTCCTCGATCAAATAGCATTCCTAACTTTGGCAACAATC
TAATTCCAGAGTGCGCTCAACCTCCCTCAAGACCTTGTGATCTACCAATT
GCAAGGAGAAATTCACTCCACAGGTTCTTGGAGAAGAGAAAAGACAGGAT
TGTTGCAAGAGCACCGTACCAAGTGAATGGCTCAGCAGGGGCTCCAGACA
AGCCCGCTGATAGCAAGTCATGGCTTGGCCTGGCTGCTCAAACTTCACAG
TAGTTTGTGCAAATTGCATCCAGTTTTAGGGACTGATTATTGGCCGGTCA
TCGTCTTTTTGGCAAACATAAACCTTGCTTCGTTTTTCTTCATCTTCCAT
CTTCTTTTAGGTTGGGTTTTGATGAGCCCACCATAGATCTAACGATCATT
CTTCTTACCAATAGTTTATGTAATTAACTTCTTTATTGAAAATTTAGTTA
ATGTTAATCCCAAAAAAAAAAAAAAAA
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