CF833111
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF833111 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 4.655e-34 Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = -3 Query: 227 VRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 502 VRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+ G + VREVG+T +Y R+Q DD K L+EL FEIGDYLDVAI Sbjct: 60 VRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151
BLAST of CF833111 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18 Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 227 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 499 RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CF833111 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18 Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 227 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 499 RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CF833111 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18 Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 227 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 499 RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CF833111 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18 Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 227 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 499 RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CF833111 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.321e-17 Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = -3 Query: 227 GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 496 G P +E+QIYTW+DATL ELT LV++V P R++ FA VYP+ ++ F +RE+G T + G++ +DD K LA+ F IGD+LD++I Sbjct: 46 GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDISI 134
BLAST of CF833111 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16 Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = -3 Query: 227 GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 496 G P E+Q++TW D +LRELT L+KEV P ARR+ FA V D+ R+++R+VG T + G R +DD K L + FE+GD++DVAI Sbjct: 49 GSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFVDVAI 137 The following BLAST results are available for this feature:
BLAST of CF833111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF833111 ID=CF833111; Name=CF833111; organism=Citrus sinensis; type=EST; length=504bpback to top |