CF833116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 8.920e-72 Identity = 127/237 (53.59%), Postives = 180/237 (75.95%), Query Frame = 2 Query: 2 EAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYD--FEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 706 +A +PF +C +VTTTTHK+LRGPRAG+IF+R +G + D E++INFAVFPS QGGPH + I +AVALK+AS+P F+ Y KQV+ N+ +G L +GYSLVT GT+NHLVLWDLRP G+TG+K+EK CD +ITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +FL R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG Sbjct: 247 QAISPFLFCDVVTTTTHKTLRGPRAGLIFFRKTKRRDA----KGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 1.165e-71 Identity = 134/232 (57.76%), Postives = 171/232 (73.71%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 706 +PF+YC +VT+TTHK+LRGPR+G+IF+R E YD E KINFAVFPSLQGGPH + I +AVALK+A + FK YA QVK NA A+GN L KGY LVT GT+NHL+LWDLRP LTGNK EK D+ NITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +FL R V+++LEIQ GK L DF + +K++ L+ +VE+F+S F +PG Sbjct: 226 SPFDYCDVVTSTTHKTLRGPRSGIIFFRRGKRVDGNGK-EIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.128e-65 Identity = 127/237 (53.59%), Postives = 161/237 (67.93%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 706 +PFE+CH+VTTTTHK+LRG RAGMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA T FK Y QV AN AL LT GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LTL+IQ + G LK+F + L +K ++AL+ +VE FAS F +PG Sbjct: 243 SPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 4.741e-65 Identity = 127/237 (53.59%), Postives = 160/237 (67.51%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 706 +PFE+CH+VTTTTHK+LRG RAGMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA T FK Y QV AN AL LT GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LTL+IQ + G LK+F + L +K ++AL+ VE FAS F +PG Sbjct: 243 SPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 246.899 bits (629), Expect = 1.056e-64 Identity = 125/238 (52.52%), Postives = 162/238 (68.07%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 706 +PFE+CH+V+TTTHK+LRG RAGMIFYR Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F+AY +QV AN AL L G GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F+HR + LTL+IQ G LK+F + L +++ + AL+A+VE FA+ F +PG Sbjct: 243 SPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 246.514 bits (628), Expect = 1.379e-64 Identity = 124/238 (52.10%), Postives = 161/238 (67.65%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 706 +PFE+CH+VTTTTHK+LRG RAGMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA TP FK Y +QV AN AL L GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G LK+F + L + + + AL+ +VE FA+ F +PG Sbjct: 243 SPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 246.128 bits (627), Expect = 1.801e-64 Identity = 125/238 (52.52%), Postives = 161/238 (67.65%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 706 +PFE+CH+V+TTTHK+LRG RAGMIFYR + Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F+AY +QV AN AL L G GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF ++ F+HR + LTL+IQ G LK+F + L + + + AL+A+VE FA+ F +PG Sbjct: 243 SPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 245.743 bits (626), Expect = 2.353e-64 Identity = 124/238 (52.10%), Postives = 160/238 (67.23%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 706 +PFE+CH+VTTTTHK+LRG RAGMIFYR + Y+ E IN AVFP LQGGPHNH I +AVALKQA T FK Y QV AN AL + LT GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F+HR + LTL+IQ LK+F + L ++ I++ L+ +VE FAS+F +PG Sbjct: 237 SPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 3.073e-64 Identity = 125/247 (50.61%), Postives = 170/247 (68.83%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 736 +PF+Y +VTTTTHKSLRGPR MIF+R E +YDFEDKIN AVFP LQGGPHNH I LAVALKQA+T +KAY +QV +N+ L +GY LV+GGT+NHLVL +L+P G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+ +AVT+ L+++ E G LKDF + ++ I++ L+ +VE+FA F GF+ MKYK+ Sbjct: 272 SPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE-VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 4.013e-64 Identity = 128/245 (52.24%), Postives = 168/245 (68.57%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 730 +PF+Y +VTTTTHKSLRGPR MIF+R E YD+EDKIN AVFP LQGGPHNH I LAVALKQA+TP ++AY +QV +N+ L+ KGY LV+GGTENHLVL +L+ G+ G++VEK+ +L +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+ AV+L L+++ E G LKDF + L + +I LK DVE+FA F GF+ + MKY Sbjct: 273 SPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516 The following BLAST results are available for this feature:
BLAST of CF833116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF833116 ID=CF833116; Name=CF833116; organism=Citrus sinensis; type=EST; length=846bpback to top |