CF833119

Overview
NameCF833119
Unique NameCF833119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13754 contig Csv1_Contig13754:128..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.677e-56
Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = -2 
Query:  250 KPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 597
            KPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct:    7 KPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.191e-56
Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = -2 
Query:  250 KPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 597
            KP K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct:    9 KPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.424e-49
Identity = 97/115 (84.35%), Postives = 104/115 (90.43%), Query Frame = -2 
Query:  253 KPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 597
            K  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+D
Sbjct:   13 KSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_RAT (40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.239e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = -2 
Query:  250 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 573
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_MOUSE (40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.239e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = -2 
Query:  250 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 573
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.239e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = -2 
Query:  250 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 573
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.239e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = -2 
Query:  250 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 573
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.239e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = -2 
Query:  250 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 573
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.167e-41
Identity = 78/103 (75.73%), Postives = 95/103 (92.23%), Query Frame = -2 
Query:  250 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 558
            IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of CF833119 vs. ExPASy Swiss-Prot
Match: RS20_PONAB (40S ribosomal protein S20 OS=Pongo abelii GN=RPS20 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.396e-41
Identity = 78/108 (72.22%), Postives = 96/108 (88.89%), Query Frame = -2 
Query:  250 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 573
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITT K+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTGKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
The following BLAST results are available for this feature:
BLAST of CF833119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS202_ARATH1.677e-5694.8340S ribosomal protein S20-2 OS=Arabidopsis thalian... [more]
RS201_ARATH2.191e-5694.8340S ribosomal protein S20-1 OS=Arabidopsis thalian... [more]
RS20_ORYSJ4.424e-4984.3540S ribosomal protein S20 OS=Oryza sativa subsp. j... [more]
RS20_RAT5.239e-4273.1540S ribosomal protein S20 OS=Rattus norvegicus GN=... [more]
RS20_MOUSE5.239e-4273.1540S ribosomal protein S20 OS=Mus musculus GN=Rps20... [more]
RS20_MACFA5.239e-4273.1540S ribosomal protein S20 OS=Macaca fascicularis G... [more]
RS20_HUMAN5.239e-4273.1540S ribosomal protein S20 OS=Homo sapiens GN=RPS20... [more]
RS20_BOVIN5.239e-4273.1540S ribosomal protein S20 OS=Bos taurus GN=RPS20 P... [more]
RS20_XENLA1.167e-4175.7340S ribosomal protein S20 OS=Xenopus laevis GN=rps... [more]
RS20_PONAB3.396e-4172.2240S ribosomal protein S20 OS=Pongo abelii GN=RPS20... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833119 ID=CF833119; Name=CF833119; organism=Citrus sinensis; type=EST; length=598bp
TTTTTCAACAATATCCAACATTGCTTAATATAAAATGAACAGTAAACAAA
ATCCCTCTCCACATAACCCAAAACATAATTTTTAACTTGCAAAATAGTAT
GGCAAAAAACAAACTAACATCAACCCTACATCGATTGTTCAGTCTTAAAT
TCTTGACAAATTCTTCCAAGCAAACAGTGTCATGAGGGAAGATTACTTCT
GATTTCACTAAAAGCTAAATGGACACAAAAATAAAGTGCCAGACATTTAA
GAGTCGGCAATGGTAACCTCCACTTCCACGCCAGGTTCAATGGTAATGGA
AGTGATCTGCTTCACGACATCAGGGGAGCTAAAGAGATCAATAACTCTCT
TGTGAACACGGAGCTCAAATCTGTCCCAAGTGTTGGTTCCTTCACCACAA
GGGGACTTCCTAGTGGTGATGTGAAGAACCTTGGTAGGCATCCTCACTGG
ACCCTTGACCCTCAATCTCTTGTCCTTGGCACCACGAACTAAATCCGTAC
AGACTTTCTCAAGATTTTTAACATTCTTGGAGGAAAGTGTGATTCTGATC
TTATGAATCTGCTCCTGGGCCTCCTCCAAACCCGGTTTGGTGGGCTTC
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