CF833120 | Citrus Genome Database

Overview


Name	CF833120
Unique Name	CF833120
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	604

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13754	contig	Csv1_Contig13754:126..729.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.225e-55
Identity = 108/115 (93.91%), Postives = 109/115 (94.78%), Query Frame = 1

Query:    7 PPHLGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            P   GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct:   10 PGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.606e-54
Identity = 107/115 (93.04%), Postives = 108/115 (93.91%), Query Frame = 1

Query:    7 PPHLGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            P   GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct:    8 PTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 7.719e-49
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 1

Query:   16 LGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 348
            +G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+D
Sbjct:   17 IGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_RAT (40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.358e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   28 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_MOUSE (40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.358e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   28 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.358e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   28 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.358e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   28 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.358e-42
Identity = 79/108 (73.15%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   28 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.194e-41
Identity = 78/103 (75.73%), Postives = 95/103 (92.23%), Query Frame = 1

Query:   43 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

[Close]

BLAST of CF833120 vs. ExPASy Swiss-Prot
Match: RS20_PONAB (40S ribosomal protein S20 OS=Pongo abelii GN=RPS20 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.473e-41
Identity = 78/108 (72.22%), Postives = 96/108 (88.89%), Query Frame = 1

Query:   28 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 351
            E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITT K+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   12 EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTGKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

The following BLAST results are available for this feature:

BLAST of CF833120 vs. ExPASy Swiss-Prot

BLAST of CF833120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74


Match Name	E-value	Identity	Description
RS201_ARATH	4.225e-55	93.91	40S ribosomal protein S20-1 OS=Arabidopsis thalian...	[more]
RS202_ARATH	1.606e-54	93.04	40S ribosomal protein S20-2 OS=Arabidopsis thalian...	[more]
RS20_ORYSJ	7.719e-49	85.59	40S ribosomal protein S20 OS=Oryza sativa subsp. j...	[more]
RS20_RAT	5.358e-42	73.15	40S ribosomal protein S20 OS=Rattus norvegicus GN=...	[more]
RS20_MOUSE	5.358e-42	73.15	40S ribosomal protein S20 OS=Mus musculus GN=Rps20...	[more]
RS20_MACFA	5.358e-42	73.15	40S ribosomal protein S20 OS=Macaca fascicularis G...	[more]
RS20_HUMAN	5.358e-42	73.15	40S ribosomal protein S20 OS=Homo sapiens GN=RPS20...	[more]
RS20_BOVIN	5.358e-42	73.15	40S ribosomal protein S20 OS=Bos taurus GN=RPS20 P...	[more]
RS20_XENLA	1.194e-41	75.73	40S ribosomal protein S20 OS=Xenopus laevis GN=rps...	[more]
RS20_PONAB	3.473e-41	72.22	40S ribosomal protein S20 OS=Pongo abelii GN=RPS20...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS02_03A22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A22, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF833120 ID=CF833120; Name=CF833120; organism=Citrus sinensis; type=EST; length=604bp
TGAAGCCCACCACACCTGGGTTTGGAGGAGGCCCAGGAGCAGATTCATAA
GATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAGAAAGTCT
GTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGT
CCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGAAGTCCCC
TTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGTGTTCACA
AGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCAGATCACT
TCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTGCCGACTC
TTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAGTGAAATC
AGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTTGTCAAGA
ATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTTTTTTGCC
ATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGAGAGGGAT
TTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTTGTTTTGA
AAAA