CF833121

Overview
NameCF833121
Unique NameCF833121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3395 contig Csv1_Contig3395:198..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.337e-67
Identity = 129/217 (59.45%), Postives = 164/217 (75.58%), Query Frame = -3
Query:  251 ELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLL-GKKQPFKDGGEAGNREEEINELISKMN 898
            ELG  G     KK KV DIKRPE F+ ++R +E+D+IRMKQR KR K      KS L+FIIRIQG +DMHPKTK+IL NL+L+ +F+GVF +A D + + L KV+PYVTYGYPN  +VK+LIYKKG   ++   +PLTDNNIIEQ LG++ I+ IED+V+EIA VG HF+EV+ FLGPL LNKP   +L  KKQ F +GG+ GNRE++IN+LISKMN
Sbjct:   35 ELGNSG----KKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.016e-61
Identity = 117/219 (53.42%), Postives = 155/219 (70.78%), Query Frame = -3
Query:  251 LGKYGHGQKNKKSKVED----IKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 895
            L K       KK  VE      KR EQ+ K+Y +++ +LIR+K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYGYPNL +VKELIYK+GY  ++ QRI LTDN+I++Q LGK+GIIC+ED++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  INEL+ +MN
Sbjct:   24 LAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.026e-60
Identity = 114/208 (54.81%), Postives = 153/208 (73.56%), Query Frame = -3
Query:  251 QKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 874
            +KN +++    KR EQ+ K+Y ++E +LI +K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYG+PNL +VKELIYK+GY  ++ QRI LTDN+I+EQ LGK+GIIC ED++HEI  VGPHFKE  NFL P  L  P GGL  K+  + +GG+AGNRE  INELI +MN
Sbjct:   35 KKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.638e-58
Identity = 107/208 (51.44%), Postives = 153/208 (73.56%), Query Frame = -3
Query:  251 QKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 874
            ++N + +     R +Q+ K+Y+++E +LI++K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYGYPNL +VKELIYK+G+  ++ QR  LTDN+I++Q LGK+GIIC+ED++HEI  VGPHFKE  NFL P  L  P GG+  K+  + +GG+AGNRE  INEL+ +MN
Sbjct:   37 KQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.777e-55
Identity = 98/206 (47.57%), Postives = 143/206 (69.42%), Query Frame = -3
Query:  254 KNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 871
            KNK+ K +  KR E+++++YR+ + + +R+K+  +         + K+ F++RI+G + +HPK +K L  LRLR+I +GVFV+ N   L +L+ +EPYV +GYPN   + +L+YK+GYA VD  R+P+TDN I+EQ+LGK+ IIC+ED+ HEIA VGPHFKE  NFL P  LN P GG   K   F +GG+ GNRE++IN L+ KM
Sbjct:   38 KNKEKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 4.176e-54
Identity = 105/207 (50.72%), Postives = 147/207 (71.01%), Query Frame = -3
Query:  251 NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKMN 868
            NK+ +    KR E ++K+YRD E + IR+++  K+        ++KL+F+IRI+G + + PK +KIL  LRL +I +GVFVR      E+++ VEP+V YGYPNL +VKELIYK+GY  V++QR+ LTDN+IIE+ LGKYGIIC+ED++HEI  VGP+FK+  NFL P  L+ P GG   +K + F +GG+ GNREE IN LI +MN
Sbjct:   42 NKEKRAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 5.453e-54
Identity = 102/218 (46.79%), Postives = 147/218 (67.43%), Query Frame = -3
Query:  251 ELGKYGHGQKNKKSKVEDI--KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 898
            ++ K G  Q+ + S++  +  KR E+++ +Y   E + IR+ +  K S      P +K+ F+IRI+G + + PK +K+L  LRL ++ +GVFV+ N   + +L+ VEPYV YG+PNL ++KELIYK+G+  +D QRIPLT N+++E+ LGK+GIIC+EDI+HEI   G HFK+V N L P  LN P GG   KK PF  GG+AGNRE  IN LI +MN
Sbjct:   29 DVAKLGRAQQLRNSRLNSVYFKRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN 246          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.666e-52
Identity = 101/199 (50.75%), Postives = 140/199 (70.35%), Query Frame = -3
Query:  251 RPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFK---DGGEAGNREEEINELISKMN 838
            R E+++K+YR+ E + IR+++  K +       + KL+F+IRI+G S M PK +K+L  LRL +I +GVFVR      E+L+ VEPY+ +GYPNLA+V++L+YK+GY  V++QRIPL+DN IIE+ LGKYGIIC+ED++HEI  VGP FK+  NFL P  L+ P GG  G ++ FK   +GG  GNREE IN LI   N
Sbjct:   53 RAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGG-WGVRRKFKHYIEGGSTGNREENINALIKAQN 250          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.778e-50
Identity = 93/197 (47.21%), Postives = 136/197 (69.04%), Query Frame = -3
Query:  251 KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 841
            ++ + + K+YR      IRM +  +++       + KL F+IRI+G + + PK +K+L  LRLR+IF+G FV+ N   + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN +I ++LGKYGIIC+ED++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE++IN LI +MN
Sbjct:   51 EKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of CF833121 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.149e-50
Identity = 93/197 (47.21%), Postives = 136/197 (69.04%), Query Frame = -3
Query:  251 KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 841
            ++ + + K+YR      IRM +  +++       + KL F+IRI+G + + PK +K+L  LRLR+IF+G FV+ N   + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN +I ++LGKYGIIC+ED++HEI  VG  FKE  NFL P  L+ P GG+  K   F +GG+AGNRE++IN LI +MN
Sbjct:   51 EKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
The following BLAST results are available for this feature:
BLAST of CF833121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL71_ARATH7.337e-6759.4560S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL73_ARATH6.016e-6153.4260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL72_ARATH1.026e-6054.8160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH1.638e-5851.4460S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_CAEEL3.777e-5547.5760S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_NEUCR4.176e-5450.7260S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_DICDI5.453e-5446.7960S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7_YARLI6.666e-5250.7560S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_MACFA4.778e-5047.2160S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_PONAB8.149e-5047.2160S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833121 ID=CF833121; Name=CF833121; organism=Citrus sinensis; type=EST; length=900bp
TTTTTTTTTTTTTTTTTAACAGCAAGCTTAATATATTTCGCAAGTGAAAT
GATAATAAAATACAGATTATCCCTAACAATAGAACCTTCAAAACTCGTTA
ACCTGGTATTAAGCTTAACAGGATTAGAAAAACATCAAAATTGGGCTACA
TAGGACTACAGTATATCTTCTCTTTAGCAGAACCATTCTTTTAGTGCCGA
ATCATTGATTCCATTTTCATCATTTGCTTCTCATGGAATCATAACTCCTA
ATTCATCTTACTGATTAATTCGTTGATTTCTTCCTCACGGTTTCCAGCTT
CTCCACCGTCCTTGAATGGTTGTTTCTTCCCTAGCAATCCTCCTTCAGGC
TTGTTTAGTGTTAAAGGACCCAGAAAGTTGATGACCTCTTTAAAATGAGG
ACCAACATTGGCTATTTCATGTACTATATCCTCAATGCATATAATGCCAT
ATTTCCCCAACGTCTGTTCAATAATGTTATTGTCTGTGAGAGGAATTCTT
TGCCTATCTACAGTTGCATAACCCTTCTTGTAAATTAGCTCCTTCACATT
TGCAAGATTAGGATATCCATATGTGACATATGGCTCCACCTTTTGCAGCA
CTTCTAACATACCATCATTAGCCCTGACAAAGACACCACTGAAAATTCTC
CTCAATCTAAGGTTGTAGAGAATCTTCTTAGTCTTAGGGTGCATATCACT
TGTGCCTTGTATGCGTATAATAAAAAGCAACTTAGATTTTGGCTTCCCGA
TCACTTTTTTCGACCTTTTCCCTCTTTGTTTCATTCGGATAAGGTCCAAT
TCCTGGTCCCTATACTGTTTGATAAATTGCTCGGGTCTTTTGATATCCTC
AACTTTGCTCTTCTTGTTCTTCTGGCCATGGCCATACTTTCCCAATTCCA
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